Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0984 ATGGTACGGACAGTGGGCGATGCTTTGGCGCCATCCAACCTCCCCACTCCGAACCTCTGTAAGCACCCACCACCGCTTCAACTGCCAGAAACCCCAATGGCGGCTCCCCAATCTTCCTCCTCCGAAACCATGACGTTAGATTCCGCTCACCTTTTTCTCAACTCCCACAAATCACTCTCTCAACACCAATCTCCCCAACCCCCTCCACCTCCCTCCCTCTCTTTTCTCTCCAATCACTCCCCTCTCCCCCCAATCCCCACCAATTTTCCTCAGTCCAAGCTCATTCCCAAATCCCGGTTCGTTGTCGATGGGTTTCGGTGCTCCGGCGACTACTCCGTCACCTACTTCCTCTCTCACTTCCACTCCGATCACTATTCCGGGCTCAGCCCTAAGTGGTCCAATGGTATTATATTCTGTTCAAATACAACTGCACGCCTTCTCGTTGAAGTGCTTGGGGTCTCTTCTTTGTTTGTTTATCCTTTGGCGGTGTCCCAACCCGTTTTGATTGATGGATGTGAAGTGGCGCTTCTCGATGCAAATCACTGCCCCGGAGCGGTGCAATTTTTGTTCAAGGTTCCTGGTGTGGATGGTAGGTTTGAAAGGTATGTTCATACTGGTGATTTTAGGTTTTGTGAATCGATGAAATTGGAGCCTTGTTTGGGTGAATTTGTTGGTTCTGAAGCGGTTTTTTTGGATACGACCTATTGTAATCCAAAGTTTGTATTTCCGTCTCAAGATGAATCTGTTGATTATATAGTTGAGGCGATAGAGAGAATTGGCCTTGAGAACAAGGGTTTGATGAAGTCTGTTTTGTTTCTTGTAGCTACTTATGTTATTGGAAAAGAGAGGATATTGCTTGAAATATCAAGAAGGCGTAACTGTAAAATACATGTAGATGGTAGAAAAATGTCGGTGTTGCGAGTTTTAGGGTATGAGGATGGTGGGGTATTTACAGAGGATGAGTCTAAGAGTGATGTTCATGTTGTTGGATGGAATGTATTGGGTGAGACTTGGCCTTATTTTAGACCCAATTTTGTGAAGATGAAGGAGATTATGATTGAAAGAGGGTACTCAAAAGTTGTGGGCTTTGTTCCTACAGGGTGGACGTATGAAGTAAAGCGCAACAAGTTTGCCATGAGGACTAAGGATTCATTTGAGATCCATCTTGTACCATACAGTGAACATTCAAACTATGATGAGCTCAGAGAATATGTTAAATTTTTGAGACCAAAGCGTGTTATTCCTACAGTAGGATTGGACATTGAGAAACTTGACAGTAAACATGCTAATGCCATGAGAAAGCATTTTGCTGGTTTGGTTGATGAAATGGCCATCAAGCATGAATTCTTGAAGGGTTTTCAACGTGGGTGCCTGGAAGCAGATGAAAATGTTGAAAATAATACGAGAACTGTCCTGAACAAGGAGCTGGATGCAGAGAAACATGTGACTTTTTCCAAAAGGAAAACGAAAGAAAGTACAGAATCAGGATTTCTTGCAGTATCTTCATCTTCTATGCAAGAACCTGGTTCACGAGATTCAACTTTGCTGAATGATAAAGGATCAGAGGAAGTCATACAAGAACTTCGTGATTGCTTGCCCATCTGGGTCACTCAAAACCAGATGTTAGATCTCCTTAGCTGCTCAGATGGAAATGTCATTGAAGCAGTTTCTAATTTCTATGAGCGTGAAACTGAATTTCGTGAGCAGGTCATTGGGCATACAAATTCTGTATGTACATCTCAGACAAGCTCACTCAAAGATTCTGTGTCACTATCTAAACTGGGTTCTGTGGGGAGCAGCCCTCAGAAAATGGAGGATATTCATGGTAGCCAAAGCTACAGTTTACTCAACATTAGGAGTTCCATGAAGAGCAGCAGTCTCTCTTCTGGGAAAAGGAAGAAAAACCTTGACAAAAAGTCAATTAAGAAAGGAAAAGTTGGTTCAAAACCAGAATCTGGTGGCTCAAAACAATCTACAATAACAAGGTTCTTCAGTAAGATAGCGAGTAATGATTCTCAAAGTGGGGATGGTATATCTGAACAACTTTCTGATAATGAAAATTCATTTCCAAGTGAGGCTATCACATCTTATGAAGAACAGGTTGAGCAGTTCATTAAGATAGTAAATGTTGATGAATCGTCAAGATACTATGTTTCCTCCATCCTGAAGAAGACGAAAGGAGATATTAATATGGCTCTGGACATATACTATAGTAAACCTGAGGGTAACCTTGGTGAGAATGAAGAGAGGTTGGTGGTCAGTAGCAAATCGATTCAACCTGAATGCTGTATCCAAAGTTGCAGTTCTGAGCTAGAGAAAAAAGTATCAGAGAAGGAATCAGGAAATATAGTTGAAGCTAAGGGGCTATCAAGAGATACTATAGCTGCAACTCTTGTATCATTACCGCTGGAAAAATATTCTCCAATAGAGCACGCATGCTGGAAGCTTGGGCAGCCTGCCCCATATTTACATCTTGCTCGGACTTTTGACCTGGTTGAGGGTGAGAAGGGCAAGATAAAAGCAGCTTCTATGCTGTGCAATATGTTTAGAAGTTTGTTGGCCTTGTCTCCTGAGGATGTGATACCTGCTGTATATCTCTGCACAAATAAGATTGCTGCTGACCATGAAAATATGGAACTAAATATTGGTGGAAGTATAGTCACATCTGCAATGGAAGAGGCATGTGGGACAAGCAGGTCTAAAATAAGGGCCATGTACAATAGCTTAGGTGATCTTGGTGATGTTGCTCAAGTATGCCGACAAACACAGTCATTCCTTGCCCCTCCTTCACCGCTACTAATTAAAGATGTGTTTTCCATGCTCCGAAATATAAGTGTACAAACAGGCAGTGGAAGTATTGTTCGAAAGAAAAGCCTTATTTTGAATCTCATGCGGTCCTGTAGAGAGAAGGAAATAAAGTTTCTTGTTAGAACTTTGGTAAGCTATTTCCGAATTGTTTGGTTCTTGATATAG 2973 0.4218 MVRTVGDALAPSNLPTPNLCKHPPPLQLPETPMAAPQSSSSETMTLDSAHLFLNSHKSLSQHQSPQPPPPPSLSFLSNHSPLPPIPTNFPQSKLIPKSRFVVDGFRCSGDYSVTYFLSHFHSDHYSGLSPKWSNGIIFCSNTTARLLVEVLGVSSLFVYPLAVSQPVLIDGCEVALLDANHCPGAVQFLFKVPGVDGRFERYVHTGDFRFCESMKLEPCLGEFVGSEAVFLDTTYCNPKFVFPSQDESVDYIVEAIERIGLENKGLMKSVLFLVATYVIGKERILLEISRRRNCKIHVDGRKMSVLRVLGYEDGGVFTEDESKSDVHVVGWNVLGETWPYFRPNFVKMKEIMIERGYSKVVGFVPTGWTYEVKRNKFAMRTKDSFEIHLVPYSEHSNYDELREYVKFLRPKRVIPTVGLDIEKLDSKHANAMRKHFAGLVDEMAIKHEFLKGFQRGCLEADENVENNTRTVLNKELDAEKHVTFSKRKTKESTESGFLAVSSSSMQEPGSRDSTLLNDKGSEEVIQELRDCLPIWVTQNQMLDLLSCSDGNVIEAVSNFYERETEFREQVIGHTNSVCTSQTSSLKDSVSLSKLGSVGSSPQKMEDIHGSQSYSLLNIRSSMKSSSLSSGKRKKNLDKKSIKKGKVGSKPESGGSKQSTITRFFSKIASNDSQSGDGISEQLSDNENSFPSEAITSYEEQVEQFIKIVNVDESSRYYVSSILKKTKGDINMALDIYYSKPEGNLGENEERLVVSSKSIQPECCIQSCSSELEKKVSEKESGNIVEAKGLSRDTIAATLVSLPLEKYSPIEHACWKLGQPAPYLHLARTFDLVEGEKGKIKAASMLCNMFRSLLALSPEDVIPAVYLCTNKIAADHENMELNIGGSIVTSAMEEACGTSRSKIRAMYNSLGDLGDVAQVCRQTQSFLAPPSPLLIKDVFSMLRNISVQTGSGSIVRKKSLILNLMRSCREKEIKFLVRTLVSYFRIVWFLI* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0984 990 MobiDBLite consensus disorder prediction 17 31 - -
Vvi14g0984 990 SUPERFAMILY Metallo-hydrolase/oxidoreductase 115 418 IPR036866 -
Vvi14g0984 990 Gene3D - 95 417 IPR036866 -
Vvi14g0984 990 FunFam DNA ligase 241 395 - -
Vvi14g0984 990 MobiDBLite consensus disorder prediction 1 41 - -
Vvi14g0984 990 Pfam DNA repair metallo-beta-lactamase 315 418 IPR011084 -
Vvi14g0984 990 MobiDBLite consensus disorder prediction 495 516 - -
Vvi14g0984 990 Pfam DNA ligase N terminus 821 985 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi14g0984 990 Gene3D - 800 986 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi14g0984 990 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 86 505 - -
Vvi14g0984 990 MobiDBLite consensus disorder prediction 623 657 - -
Vvi14g0984 990 MobiDBLite consensus disorder prediction 63 77 - -
Vvi14g0984 990 Gene3D - 241 395 - -
Vvi14g0984 990 MobiDBLite consensus disorder prediction 57 77 - -
Vvi14g0984 990 CDD SNM1A-1C-like_MBL-fold 77 238 - -
Vvi14g0984 990 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 801 985 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vvi14g0984 990 MobiDBLite consensus disorder prediction 495 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0984 Vvi-Chr14 19449888 19458252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0984 741 985 Core DNA Replication Machinery Family AT1G08130 33.065 9.82e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0984 - - vvi:100266816 1848.17