Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0975 ATGTTAAGGATGTTGGCTCGGCTGCGCCACAAGGACCCTTCGGATGATTTCGACATGCAACTGATTGGAACCTTTCTGAGTTTCGCCTCCAGAGGCGATAGGGTCGGATTGAACCAGATGTTGAGGGAGGGAACATCTCCAAACGTCCAAGATTACGATAAGAGGACGGCTTTGCATCTCGCCGCTAGCGAAGGCCATGCCTCGATTGTTGAGCTTCTTCTGCACTATAGTGCCAATGTTAATCTCGAAGATAGGTGGCAGAAGACTGCTCAAAAGTATCTTGAACCACCTTGGAAAATGTCAGGTATCATCCTATTGCCATGGTTATGA 330 0.4818 MLRMLARLRHKDPSDDFDMQLIGTFLSFASRGDRVGLNQMLREGTSPNVQDYDKRTALHLAASEGHASIVELLLHYSANVNLEDRWQKTAQKYLEPPWKMSGIILLPWL* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0975 109 SUPERFAMILY Ankyrin repeat 24 92 IPR036770 -
Vvi14g0975 109 Pfam Ankyrin repeat 54 84 IPR002110 GO:0005515
Vvi14g0975 109 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Vvi14g0975 109 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Vvi14g0975 109 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 29 90 IPR039323 -
Vvi14g0975 109 SMART ANK_2a 53 82 IPR002110 GO:0005515
Vvi14g0975 109 Gene3D - 17 93 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0975 Vvi-Chr14 19159432 19160570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0975 16 90 MAP Kinase Kinase Kinase AT2G31800 49.333 3.93e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0975 K06272 - vvi:100852545 177.563