Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0961 ATGGCTTTGCAGAATATAGGTGCTGGGAATAGGGATGATGCCTTCTACAGGTATAAGATGCCCAAAATGGTTACCAAAATAGAGGGTCGGGGAAATGGCATCAAGACAAATGTGGTCAACATGGTAGATATTGCAAAAGCATTGGCTAGGCCGGCCTCTTACACTACAAAGTATTTTGGTTGTGAGCTTGGAGCCCAATCTAAATTTGATGAGAAAACTGGAGTTTCTCTTGTTAATGGGGCTCATGACACCCCTAAACTTGCTGGCCTTCTTGAGAACTTCATTAAGAAGTATGTCCAGTGTTATGGCTGTGGAAACCCAGAGACTGAGATACTTATTACAAAAACTCAGATGATTCAACTGAAGTGTGCTGCGTGTGGTTTCGTGTCTGATGTGGATATGAGGGATAAGCTCACGACATTCATCTTGAAGAATCCACCTGAGCAAAAGAAGGGATCAAAAGACAAGAAGGCCATGAGGAGGGCTGAGAAAGAGAGATTGAAGGAAGGTGAGGCTGCTGATGAAGAGCTGAGGAAGCTGAAGAAAGAGGTGAAGAAGAAGGGGTCTTCCACTTCCAAGGATGGCCCCACAAAATCTCTCTCTTCCAAGAAGAAAGCTAATGGTTCTGATGAGGATCGCACATCACCACCTCGAAGTCAGGTTGATGAAAAGGAAGAGGCTGATTATGAAGATGATGATGATGATGTTCAGTGGCAAACTGATACATCACTGGAGGCAGCTCGTCAACGGATCCAGGAGCAATTGAGTGCTGCAACTGCTGAGATGGTTATGCTATCTACTGATGAACCAGAAAAGAAAATAAAGCCAGTAAATAATAAAGCAAATGGTAGTCCAAAATGTGCTTCTCCTCCACCCGAAGAAAAACCCAAGGCTGAGAATGGGAGTTCAGAAGAATCTAACCATGAAAGGCTGGTTGAAGAGGTGAAAGCAAATCTGAAGAAAGGGGTTGGTGCAAAGCAATTGCAGTCCATTTTGGCATCACTGACTGGCTCTGGCCAGGAAAAAATGACGACCCTGTTTGAGGCCCTGTTTGAGGGTGTTGAGAAAGGATTTGCAAAGGAAGTGGAGAAGAAGAAGAGCTACCTTGCTTCGACTATTGCAGGGGATGAGGGGTCGCAGTTGCTGTTGCTTCGTGCTATTGAGGCATTCTGTGGTAAGTCGAGGCCAAGTGCATTGAAAGAAGTGGCATTGGTTTTGAAGGGTCTGTATGATGGAGATGTGTTGGAGGAGGAGTACATAGTGCAGTGGTATGAAGAAGGGGTGTCAGGAGCCAACAAGAAGTCTCAGATCTGGAAGAATGCCCAACCTTTCATCACTTGGATCCAGAGTGCGGAGTCTGAATCTGAGGAGGAATGA 1377 0.4539 MALQNIGAGNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGVSLVNGAHDTPKLAGLLENFIKKYVQCYGCGNPETEILITKTQMIQLKCAACGFVSDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEELRKLKKEVKKKGSSTSKDGPTKSLSSKKKANGSDEDRTSPPRSQVDEKEEADYEDDDDDVQWQTDTSLEAARQRIQEQLSAATAEMVMLSTDEPEKKIKPVNNKANGSPKCASPPPEEKPKAENGSSEESNHERLVEEVKANLKKGVGAKQLQSILASLTGSGQEKMTTLFEALFEGVEKGFAKEVEKKKSYLASTIAGDEGSQLLLLRAIEAFCGKSRPSALKEVALVLKGLYDGDVLEEEYIVQWYEEGVSGANKKSQIWKNAQPFITWIQSAESESEEE* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0961 458 Gene3D - 105 145 - -
Vvi14g0961 458 FunFam Eukaryotic translation initiation factor 5 304 449 - -
Vvi14g0961 458 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vvi14g0961 458 CDD W2_eIF5 302 451 - -
Vvi14g0961 458 MobiDBLite consensus disorder prediction 143 310 - -
Vvi14g0961 458 Gene3D - 3 104 - -
Vvi14g0961 458 MobiDBLite consensus disorder prediction 225 239 - -
Vvi14g0961 458 ProSiteProfiles W2 domain profile. 301 458 IPR003307 GO:0005515
Vvi14g0961 458 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Vvi14g0961 458 MobiDBLite consensus disorder prediction 240 261 - -
Vvi14g0961 458 Gene3D - 301 458 - -
Vvi14g0961 458 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Vvi14g0961 458 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Vvi14g0961 458 SUPERFAMILY ARM repeat 304 452 IPR016024 -
Vvi14g0961 458 Pfam eIF4-gamma/eIF5/eIF2-epsilon 380 458 IPR003307 GO:0005515
Vvi14g0961 458 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Vvi14g0961 458 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vvi14g0961 458 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 457 IPR045196 GO:0003743|GO:0006413
Vvi14g0961 458 SMART 542_3 367 454 IPR003307 GO:0005515
Vvi14g0961 458 MobiDBLite consensus disorder prediction 148 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0961 Vvi-Chr14 18872252 18873628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0961 1 451 Eukaryotic Initiation Factors Gene Family AT1G36730 64.176 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0961 K03262 - vvi:100263898 843.573