Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0960 ATGGATGTGGATATTGGACCATCTCAAAGGATATTAGTACAGTGTAGGATTTGCCATGATGAGGATGAAGACTCCAACATGGAAGTACCATGCTCTTGCGCTGGTAGTTTGAAGTATGCTCACCGTGGATGTGTTCAACGTTGGTGTAATGAAAAGGGGAACACCACATGTGAGATCTGCCACCAGCAATTCAGGCCAAATTATACAGCACCACCCCCTCTGTTTCATTATGGCGGTATTCCAATGAATTTCAGGGGAAATTGGGAGGTTTCCAGGAGAGATGCAAATCACCCTCGCTTTATAGCAATGGTTGCTAGCGACCGGAATTTTCTGGATACTGACATTGATGAGTATCCAGCTCCCAATTCAAGAAGTGTGATATGCTGCCGGATAGTTGCTATAATTTTCATGATCCTCCTGGTTTTGCGGCATACCTTGCCAATCATAATTAGTGGGGCTGGTGAATACTCGTTTACACTGTTTACGTTGTTGATGTTGAGAGCCATTGGGATTCTGTTGCCTGTCTATATCATGGTTAAAGCATGTACCGCCTTTCAACGTCGGCGACACCAACAGGATGCTCGTAACTTACCATCTGATGAAGAAAATGAAATGCAGCCCCAGCCACGCATCATCCAAATCCGATAG 648 0.4491 MDVDIGPSQRILVQCRICHDEDEDSNMEVPCSCAGSLKYAHRGCVQRWCNEKGNTTCEICHQQFRPNYTAPPPLFHYGGIPMNFRGNWEVSRRDANHPRFIAMVASDRNFLDTDIDEYPAPNSRSVICCRIVAIIFMILLVLRHTLPIIISGAGEYSFTLFTLLMLRAIGILLPVYIMVKACTAFQRRRHQQDARNLPSDEENEMQPQPRIIQIR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0960 215 FunFam Zinc finger family protein 4 70 - -
Vvi14g0960 215 SMART ringv_2 14 61 IPR011016 GO:0008270
Vvi14g0960 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 71 IPR013083 -
Vvi14g0960 215 Pfam Protein of unknown function (DUF3675) 66 182 IPR022143 -
Vvi14g0960 215 CDD RING_CH-C4HC3_MARCH 15 61 - -
Vvi14g0960 215 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Vvi14g0960 215 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 9 192 IPR033275 -
Vvi14g0960 215 SUPERFAMILY RING/U-box 13 65 - -
Vvi14g0960 215 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Vvi14g0960 215 MobiDBLite consensus disorder prediction 192 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0960 Vvi-Chr14 18864922 18871780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0960 15 65 C3H Transcription Factor Family AT2G37950 46.296 1.93e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0960 - - vvi:100258737 453.366