Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0947 ATGGCGAAGTTAAGATTTTCAGAAGACGAATGCGACGATGCTTTGCCAGTGAAGGTGGTGCTCGCAAGAGAACGGAGAATAGCCTACAGATTTAGAATTGGAGGTGCAGGGCAACCGGGGATGTCCTCTGACGAAGAACATGACGGCTCCTGCTCATCTGAAGGATCGGATGATGATACGGATGATTCCGCGGACGTGAATGTGGAAATTGTTGATGATGAACATGGACAAGAAATCGTGGAGGCAGTGCGAGACCCAGGTCAGGGAACAAGTTCGGGAAGCGAGGCTAATAGAGATGCTTCGGTTTCTGTGATCCTGACTGACCCGGAAGTGCTTGATTGCTCCATTTGCCTTGAACCCTTGAGCGTTCCCGTATTTCAGTGTGAGAATGGGCATATAGCATGCTCTTCCTGCTGCACCAAACTCAGCAACAGATGCCCGTCCTGCTCCTGGCCTATTGGCTATAACCGTTGCCGGGCTATTGAAAAGGTTCTTGAATCAGTCAAAGTATCATGCCAAAACACAGCATATGGCTGCAAAGAAACAGTGAGTTACGGTAAGAAACATGACCACGAGGTGACATGCAACTACGTACCATGTTCATGCCCTCATTCCAACTGCAACTTCCGGGGATCATCCAAACAGCTAGCTCAACACTTCAGAAGTAAACATCTGAATTCAGTGATACGCTTCCAGTACAACAGCTTCTTCCCTGTTCATTTGGAATTTAATGCAGTGGACAAGTTCTGCATTCTAGAAGCAAAAGAAGGTGCCCTATTCATTGTTAGTAGCTCTATTCAACAGCTTGGGCATGCAGTCACAGTTTGTCGTATTGGGCCTAGATCATCTAGAGGGCATGCATTCAATCTTGCAGCATGGAAAGGGGACAGGTCGATCATGTTACAATCATTCACGGAGAATATTAGAGAAGTTGTTGAACTTCCTTCTCTTTCAATGGGATTTCTTCTAATTCCAAACGCATTCCTGGGTTCTTCAGGACAGTTGAAGTTGGAGCTGTGTATAAGGGGGAACAATGCACGTCCTGCAAAAAAAATAAAGCTGAAGTAG 1068 0.4625 MAKLRFSEDECDDALPVKVVLARERRIAYRFRIGGAGQPGMSSDEEHDGSCSSEGSDDDTDDSADVNVEIVDDEHGQEIVEAVRDPGQGTSSGSEANRDASVSVILTDPEVLDCSICLEPLSVPVFQCENGHIACSSCCTKLSNRCPSCSWPIGYNRCRAIEKVLESVKVSCQNTAYGCKETVSYGKKHDHEVTCNYVPCSCPHSNCNFRGSSKQLAQHFRSKHLNSVIRFQYNSFFPVHLEFNAVDKFCILEAKEGALFIVSSSIQQLGHAVTVCRIGPRSSRGHAFNLAAWKGDRSIMLQSFTENIREVVELPSLSMGFLLIPNAFLGSSGQLKLELCIRGNNARPAKKIKLK* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0947 355 ProSiteProfiles Zinc finger RING-type profile. 114 150 IPR001841 -
Vvi14g0947 355 ProSiteProfiles Zinc finger SIAH-type profile. 167 225 IPR013010 GO:0008270
Vvi14g0947 355 SUPERFAMILY RING/U-box 113 156 - -
Vvi14g0947 355 Pfam Seven in absentia protein family 157 313 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi14g0947 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 220 IPR013083 -
Vvi14g0947 355 SUPERFAMILY TRAF domain-like 167 341 - -
Vvi14g0947 355 CDD RING-HC_SIAHs 112 150 - -
Vvi14g0947 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 86 342 IPR044286 -
Vvi14g0947 355 MobiDBLite consensus disorder prediction 34 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0947 Vvi-Chr14 18469812 18478259 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0947 62 342 C3H Transcription Factor Family AT2G41980 29.252 2.34e-24 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0947 K04506 - vvi:100260463 689.493