Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0944 ATGGTACCAAGTGAAAATGATTCCATGATGGGAAAAAGAAAGTTAGAAGAACTTATTGCCTTGGAAGGGAAGAAGAAAAAGAAGAAGAAGAAGCAAGTTGCAACACCTCGTCCTGCATGTTCTTGGGTGTATTTTAGCCGGGAGTTTATTAGGGAGTATAGTGCTTCCCATCCTGAGTCTTCAGGCCTTAAAGCTGCCACAAAGGCTGCCTCAGATGCTTGGAAATCTATGAGCCTTGAGGAGAAAGCAAAATACACTAAGCGTTCCCGTGAAGTGTGGGATAACTACTTGACAACAGCTCCCGCCCGTGCCCCCAAACCTAGAAAACAGACTAACCTTGTCACAAGGTGCTCTCCTGGACGGCTATTCAATGTCTTACAACGCCTCACACCTGATCAAAAGGCTGCAGTGAGAAGCATGGGATTTGGAAGCCTCCTTGGCCTCAGATGCAGGACCCTTCGCCGCAGTTTGTGCCTTTGGTTATTGGAGAGGTTCAACACGGCAAGACGCAGCTTGGAGATTTGTGGTGAGCGCATTCCTTTATCCCCAAAGGATGTGGAGCTGGTGATGGGGTTAGCAGCTAGTGGGAAGGATGTGGTTAATTCAGGCCCTGACGACCTAATTGTAGAATTACGTAATAGTTATAATGCTACAAATCATGGGATTTCTGTACGTCTTCTCGAGGAGCGATTGGCGGCTCCAGAAGCAGGAGAGGAATTTAAGAGATCATTTATCCTTTATGCATTGGGCACTGTGTTGTGCCCTACAGCAAGACTAGATGTTAGTCCTTCATTCCTCCATTTCTTGACAAATATGGATACCATCCATCAATACAACTGGGGAAAATTTTTGCTTGACCGGCTAGTTCGAGAGGTATCTCGCTTTCATCAAGGCAAACAACGTGCAGTTGGTGGCTGTCTTTTGTTTCTCCAGCTTTTTTACTATGAGACTGTTTCTGTGGAACGACCTGGTTCATTGGTGCCTGGTCTTGGTCCATGCTTGTCATCATGGGGAGAGGAAGAGATTACTGAGAGAGAAAAACGAGAAAGAGAGCTTGGTGGTTATGGTTTTGGAGAGGTGCTTTACAAGGAGAGTTGCCTAGGGACTGAATCATCCAGATGCAGAGCCCAACTAGATTGTCTGCCATCAGGCAGAATGGGTACTAGCTCTGAGCATGGTCCTGCCCTTGGACATGAGGGGAACCAGGTTGAGAGAGATCAAATGAATGGAGAAATCATTATGGATGAGGCAAATTTGCCAATTTATCTTGGGGATAAGAATGTAGTATGTGGAGACATTGAAGTGGTTGTGGAATCAGTGAGAAAAGCATGCCAGAACAAAGAATATGGGTGCAAAGAAACATTGGATTACATGAAGAAAAGTGAACATGAAGAGACTTGCAGCTATGCACCATGCACATGCCCTCTTCTAGAGTGCGACTTTGTTGGCTCATCTGAACAGTTGTCATTACACTTCAGCAGTAAACATTGGGATTCTGGAAGGCGTTTCAGATACAATTGCCCTCAAGCCATATCCTTGGGCATGAATGAGCCATTCCTTGTTCTTCAAGCAGAGGAGGATGGTATTCTTTTTCTTCTCAACAAGGGGATTGAAGCAATTGGAAATACAATCATGATAACTTGCATTAAGCCAAGTTCATCAAAGGAGACGTTCTTGTATGATTTAGTATCAGGAAGAGGAATCAGCTCTCTTCGACTAAAATCATTTACACAGAATTTCCCGGGTCGAGTGGAGGGCTTTCCTCCAGTGGATTTCCTTCTAATTCCATTTCGGTTCCTCAATTCTTCACGGCAGCTCAATGTAGAGGTTTGTATATGGAATTCAACAGAACTTGGTGCCGATTGCCCTGCCCTTGGCTTGGCCATTTCATGA 1893 0.4501 MVPSENDSMMGKRKLEELIALEGKKKKKKKKQVATPRPACSWVYFSREFIREYSASHPESSGLKAATKAASDAWKSMSLEEKAKYTKRSREVWDNYLTTAPARAPKPRKQTNLVTRCSPGRLFNVLQRLTPDQKAAVRSMGFGSLLGLRCRTLRRSLCLWLLERFNTARRSLEICGERIPLSPKDVELVMGLAASGKDVVNSGPDDLIVELRNSYNATNHGISVRLLEERLAAPEAGEEFKRSFILYALGTVLCPTARLDVSPSFLHFLTNMDTIHQYNWGKFLLDRLVREVSRFHQGKQRAVGGCLLFLQLFYYETVSVERPGSLVPGLGPCLSSWGEEEITEREKRERELGGYGFGEVLYKESCLGTESSRCRAQLDCLPSGRMGTSSEHGPALGHEGNQVERDQMNGEIIMDEANLPIYLGDKNVVCGDIEVVVESVRKACQNKEYGCKETLDYMKKSEHEETCSYAPCTCPLLECDFVGSSEQLSLHFSSKHWDSGRRFRYNCPQAISLGMNEPFLVLQAEEDGILFLLNKGIEAIGNTIMITCIKPSSSKETFLYDLVSGRGISSLRLKSFTQNFPGRVEGFPPVDFLLIPFRFLNSSRQLNVEVCIWNSTELGADCPALGLAIS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0944 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 492 IPR013083 -
Vvi14g0944 630 Pfam HMG (high mobility group) box 36 101 IPR009071 -
Vvi14g0944 630 SUPERFAMILY HMG-box 22 98 IPR036910 -
Vvi14g0944 630 SUPERFAMILY TRAF domain-like 440 610 - -
Vvi14g0944 630 SMART hmgende2 34 105 IPR009071 -
Vvi14g0944 630 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 85 616 IPR044286 -
Vvi14g0944 630 CDD HMG-box_SF 37 96 - -
Vvi14g0944 630 Gene3D High mobility group box domain 20 102 IPR036910 -
Vvi14g0944 630 Pfam Plant mobile domain 184 323 IPR019557 -
Vvi14g0944 630 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 35 104 IPR009071 -
Vvi14g0944 630 Pfam Seven in absentia protein family 433 505 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi14g0944 630 ProSiteProfiles Zinc finger SIAH-type profile. 439 497 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0944 Vvi-Chr14 18424935 18432884 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vvi14g0944 Sina 2.7e-13 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0944 - - vvi:100263780 1217.99