Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0925 ATGAGGAAGCCTTGCTGTGATAAAAAAGACACAACAAAGGGAGCTTGGTCTAAGCAAGAAGACCAGAGGCTCATTGATTACATCAAGACTCATGGTGAAGGCTGTTGGCGTTCTCTCCCCAAGGCTGCAGGGTTGCATCGCTGTGGCAAAAGCTGCAGGCTGAGATGGATAAACTATCTAAGACCAGACCTCAAACGCGGTAACTTCGGCCAAGATGAAGAGGACCTCATAATCAAGCTCCATGCCCTCCTCGGGAACAGGTGGTCATTGATAGCTGGAAGGTTGCCCGGGCGGACGGACAACGAGGTTAAGAACTACTGGAACTCTCATATCAGGAAGAAGCTGATAAACATGGGCATTGATCCAAATAACCATCGGGTGAACCAAAGTTTTGCTGCTCCTCTAAACCGGTGTGCTTCTGCTGCTACCATGTCATCCGGCTCCATGACTGGCGCATGCGATAATAAGTCACTGAAACCTTCTGCTGATAATGATCCCCTCTCCGATTCTGCAAGTGGCCTTGAAGATGAAATATCCGCCTCCCTTGACTTGAATCTTGATCTCACCATTGCCATTCCTGCTTCTTCACTCACGGACGTCATTGACAAGAAGCGGCAAGATACTAAATCAATATTCTCCAGGGAGGTGGAAGGTGACGCAAATCCTACCCTTATTTTATTCAGATGA 687 0.4803 MRKPCCDKKDTTKGAWSKQEDQRLIDYIKTHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDLKRGNFGQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKLINMGIDPNNHRVNQSFAAPLNRCASAATMSSGSMTGACDNKSLKPSADNDPLSDSASGLEDEISASLDLNLDLTIAIPASSLTDVIDKKRQDTKSIFSREVEGDANPTLILFR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0925 228 SMART sant 12 62 IPR001005 -
Vvi14g0925 228 SMART sant 65 113 IPR001005 -
Vvi14g0925 228 Gene3D - 68 132 - -
Vvi14g0925 228 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vvi14g0925 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 143 - -
Vvi14g0925 228 MobiDBLite consensus disorder prediction 149 172 - -
Vvi14g0925 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vvi14g0925 228 MobiDBLite consensus disorder prediction 149 168 - -
Vvi14g0925 228 CDD SANT 68 111 IPR001005 -
Vvi14g0925 228 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Vvi14g0925 228 Gene3D - 12 65 - -
Vvi14g0925 228 CDD SANT 15 60 IPR001005 -
Vvi14g0925 228 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vvi14g0925 228 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vvi14g0925 228 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vvi14g0925 228 FunFam Transcription repressor MYB4 68 134 - -
Vvi14g0925 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vvi14g0925 228 FunFam MYB-related transcription factor 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0925 Vvi-Chr14 17968534 17969389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0925 2 214 MYB Transcription Factor Family AT4G38620 54.867 8.10e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g0925 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0925 K09422 - vvi:100251783 466.848