Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0917 ATGGAGTCGGAGCTTCACTTTCCAACCACGCCGTCCGACCCCGACACTCCCCGAACTGCAACCACCGCAGTCAATCGTACCCTCCACCTCCTCCAATCTGACGACCCTGATTCCCAAATTCAAGCTGCCAAAGAAATCCGCCGCCTCACTAAAACATCCCAGAAGTGTCGGCGGCAGCTCTCCCCCGCCGTCAGGCCGCTTGTCTCCATGCTCCGACTCGATTCCCTCGACTCTAACGAGGCCGCTCTTCTCGCCCTCCTCAACCTTGCCGTCAAAGATGAAAAAAATAAGGTCAACATTGTTGCCTCTGGAGCCCTAGAACCCATTATCAGTTTTCTTCAGTCGCAGAATTCAAATATGCAGGAGTATGCCACTGCATCTTTGCTCACACTGTCTGCTTCTACCATTAACAAGCCAACCATAAGTGCTGCAGGTGCAATTCCTCTCCTTGTTGAAATCCTTAGACATGGAAGCCCACAAGCCAGGGTCGATGCAGTGCTAGCTCTTTACAATCTCTCAACATATTCTGATAATATCAGCATCATTCTTGAAGCAAAACCCATCCCTTCAATAGTTGACCTGCTTAAAACCTGTAAAAAATCTTCAAAAACAACTGAAAAATGTAGTGCTCTTATAGAATCTTTGGTGGCTTTTGATGAGGGGAGAACTGCCTTGACATCTGAAGAAGGGGGAGTGCTTGCAGTGGTGGAAGTTCTTGAGAATGGGTCTCTCCAAAGCCGGGAGCATGCAGTGGGGGCACTATTAACAATGTGCCAGAGTGACCGATGTAAATATAGGGAACCAATTCTTAGAGAAGGCGTAATCCCTGGTCTCCTCGAGCTCACTGTTCAAGGAACACCCAAGTCCCAGTCAAAGGCACAAACCCTCTTGCGGTTACTGCGGGACTCTCCTCATCCAAGATCCGAGCTGCAACCTGACACTCTAGAGAACATCGTGTGCAACCTCATCTCTCAGATTGACAGCGAGGATCAATCTCGCAAGGCTAAGAAGATGCTAGCAGAGATGGTGCAAGTTAGCATGGAACAAAGCTTGAGACATTTACAGCAAAGAGCTGTAGTGTGCACACCGACTGATCTTCCTATTAACAATTGTACTTCAGAAGTTTCTTCAAAATGA 1137 0.482 MESELHFPTTPSDPDTPRTATTAVNRTLHLLQSDDPDSQIQAAKEIRRLTKTSQKCRRQLSPAVRPLVSMLRLDSLDSNEAALLALLNLAVKDEKNKVNIVASGALEPIISFLQSQNSNMQEYATASLLTLSASTINKPTISAAGAIPLLVEILRHGSPQARVDAVLALYNLSTYSDNISIILEAKPIPSIVDLLKTCKKSSKTTEKCSALIESLVAFDEGRTALTSEEGGVLAVVEVLENGSLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKAQTLLRLLRDSPHPRSELQPDTLENIVCNLISQIDSEDQSRKAKKMLAEMVQVSMEQSLRHLQQRAVVCTPTDLPINNCTSEVSSK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0917 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 185 IPR000225 GO:0005515
Vvi14g0917 378 Pfam Armadillo/beta-catenin-like repeat 137 173 IPR000225 GO:0005515
Vvi14g0917 378 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Vvi14g0917 378 FunFam U-box domain-containing protein 4 8 360 - -
Vvi14g0917 378 PANTHER U BOX DOMAIN-CONTAINING 22 307 - -
Vvi14g0917 378 SMART arm_5 93 133 IPR000225 GO:0005515
Vvi14g0917 378 SMART arm_5 175 217 IPR000225 GO:0005515
Vvi14g0917 378 SMART arm_5 50 91 IPR000225 GO:0005515
Vvi14g0917 378 SMART arm_5 134 174 IPR000225 GO:0005515
Vvi14g0917 378 SMART arm_5 218 259 IPR000225 GO:0005515
Vvi14g0917 378 SUPERFAMILY ARM repeat 24 342 IPR016024 -
Vvi14g0917 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Vvi14g0917 378 Gene3D - 12 365 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0917 Vvi-Chr14 17664431 17668798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0917 22 305 U-box Gene Family AT2G23140 34.965 1.08e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0917 - - vvi:100241519 667.922