Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0913 ATGGCACTTGCCAAGGACCGGACCCCACATGACTTGAGCATGGGCTCCGTGCAACACTGTTCTTTGATTTACGGAAATGTGATAGGAGGATCAGCAGTTGAAGGGGTTTCAGATCTTTCCTCGCCCGGGGTTTATGGGCTCGATGATTATCACAAGGCCGTGATTGAGGAGGGAGATGAGTCGGAGAAGAGTAGTGCCGGGTTTGTCAAGCCGTATGTCATGAGCCATGCTTCTTCCATTTCTGGTGCCAGCAGTGCAAATTGTAACGCAATTCGGCCTATGAATTATCAACCCCAGGAAGCTCATTCTGTGATAACCTTCAAAACCAGGTATGAGAATTTCATGCACAACAGTGGATCTTTGCTTAGCTTTGAGCAAAATGAGAGGGGTTCTCAGGTCACTTACACCAAGGTTTGCCACGAAGATGACTACTCCAATTGGGAAGATAATTTGAATTACGATTACCAAAATCAACTCAACCCAAAGTTGAACTCCAACCCTCGGCTGTTGGAGGATTTCAACTGTTTTCCGGCCAGCAGCTATGGCTCCATGAGCGGTAACACCCCAAAAGAAAACCAACATGGAGAAGAGTCATTTGGGTGGATATACACTGAAGCAACCGCAGTCACTGATAGCATTCAGGAGTCTGCAACAAAAGAATCATGCTTCCATAAGCGCCCCCATATGGGAGAGACCATGCAAGCTCTAAAAAGGCAGTGCACAGCTGCAACAAGGAAGTCCAAACCAAAGTCAATTCCACCCAAGGATCCACAAAGCCTCGCAGCCAAGAATCGACGAGAGCGGATCAGCGAGCGGCTAAAGATACTGCAAGATCTGGTACCAAATGGTTCCAAGGTTGATTTGGTGACCATGTTAGAGAAAGCCATTAGTTATGTCAAGTTCCTCCAATTGCAAGTGAAGGTGCTGGCAACCGATGAATTTTGGCCAGTGCAGGGTGGAAAGGCTCCTGATATCTCTCAAGTGAAGGAAGCCATTGATGCCATTCTGTCATCCCAGAGAGACACAAATTCAAGCTCAAAGTGA 1044 0.4722 MALAKDRTPHDLSMGSVQHCSLIYGNVIGGSAVEGVSDLSSPGVYGLDDYHKAVIEEGDESEKSSAGFVKPYVMSHASSISGASSANCNAIRPMNYQPQEAHSVITFKTRYENFMHNSGSLLSFEQNERGSQVTYTKVCHEDDYSNWEDNLNYDYQNQLNPKLNSNPRLLEDFNCFPASSYGSMSGNTPKENQHGEESFGWIYTEATAVTDSIQESATKESCFHKRPHMGETMQALKRQCTAATRKSKPKSIPPKDPQSLAAKNRRERISERLKILQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSSQRDTNSSSK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0913 347 Gene3D - 253 310 IPR036638 GO:0046983
Vvi14g0913 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 302 IPR011598 GO:0046983
Vvi14g0913 347 MobiDBLite consensus disorder prediction 241 265 - -
Vvi14g0913 347 FunFam Transcription factor bHLH83 251 310 - -
Vvi14g0913 347 Pfam Helix-loop-helix DNA-binding domain 262 303 IPR011598 GO:0046983
Vvi14g0913 347 SMART finulus 259 308 IPR011598 GO:0046983
Vvi14g0913 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 312 IPR036638 GO:0046983
Vvi14g0913 347 CDD bHLH_AtIND_like 254 316 - -
Vvi14g0913 347 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 95 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0913 Vvi-Chr14 17518670 17520154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0913 201 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 71.622 1.94e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g0913 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0913 - - vvi:100255367 660.603