Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0900 ATGGACGGCCCGTCAGAAGTGCGGAAAGGTGCATGGACAAGGGAAGAAGATGTTCTGCTAAGGACGTGCATTGAAAAGTATGGAGAGGGAAAGTGGCATCAGGTTCCTTTCCGATCGGGGTTGAACCGCTGCCGGAAAAGCTGTAGACTGAGGTGGTTGAACTATCTGAGGCCAGATATCAAGAGAAGAGAATTCACGACCGATGAAGTTGATCTCATTATAAGGCTTCACAGGCTGTTGGGCAACAGGCAAGCTCCGAAACATCAGCTTCCGGGAAGAACTTCAAACGATGTAAAGAATTACTGGAACACCCACCAGAGCAAGAAGTACTTTGGTAAAGCGGGTAAAGATGTAGCTGACAAGACAGCCAAAGTCACAGTTATAAATACTTGTCCTCGGACCTTCTATAAGAACCTATCTTATTTAAAAGGAAAAGCAGCAAAAGAAAGTGATGTCCAATCAGCAGATCATACTCTTAGCAAGCCATATTCAACGCCACCTCTGTCAGAGGATGGATTTTCATGGTTGGACAGCTTATTTTCTGGCAAGGAAGGCCAAAAAGAAAGCACATGTTTCAGAGATGGATCAGCGAACGAATCCATTTCAAGCTTCTGGGATGAGGAAACTCCAGCAGCTACGAAAGTAGGGGAGACTTTTCTAGAAGAGAAGGAAAGTGACTGGAACCACTTCTCTTTCGATGTGGACCTTTGGGATCTTTAA 720 0.4514 MDGPSEVRKGAWTREEDVLLRTCIEKYGEGKWHQVPFRSGLNRCRKSCRLRWLNYLRPDIKRREFTTDEVDLIIRLHRLLGNRQAPKHQLPGRTSNDVKNYWNTHQSKKYFGKAGKDVADKTAKVTVINTCPRTFYKNLSYLKGKAAKESDVQSADHTLSKPYSTPPLSEDGFSWLDSLFSGKEGQKESTCFRDGSANESISSFWDEETPAATKVGETFLEEKESDWNHFSFDVDLWDL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0900 239 CDD SANT 64 105 IPR001005 -
Vvi14g0900 239 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi14g0900 239 FunFam Myb transcription factor 9 61 - -
Vvi14g0900 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 60 IPR017930 -
Vvi14g0900 239 Gene3D - 63 127 - -
Vvi14g0900 239 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 178 - -
Vvi14g0900 239 SMART sant 61 108 IPR001005 -
Vvi14g0900 239 SMART sant 8 58 IPR001005 -
Vvi14g0900 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 110 IPR017930 -
Vvi14g0900 239 Gene3D - 4 61 - -
Vvi14g0900 239 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vvi14g0900 239 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Vvi14g0900 239 SUPERFAMILY Homeodomain-like 7 102 IPR009057 -
Vvi14g0900 239 CDD SANT 11 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0900 Vvi-Chr14 17076633 17077705 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0900 2 135 MYB Transcription Factor Family AT1G66370 57.241 1.85e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g0900 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0900 - K09422 vvi:100248383 486.493