Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0895 ATGGACGGCCCTTCAGGAGTGCGGAAAGGTGCATGGACAAGGGAAGAAGATGTTCTGCTAAGGACGTGCATTGAAAAGTATGGAGAGGGAAAGTGGCATCAGGTTCCTTTCCGATCGGGGTTGAACCGCTGCCGGAAAAGCTGTAGACTGAGGTGGTTGAACTATCTGAGGCCAGATATCAAGAGAGGAAAATTCAAGACCGATGAAGTTGATCTCATTATAAGGCTTCACAAGCTGTTGGGCAACAGATGGGCATTGATTGCTGGTAGGCTTCCGGGAAGAACTTCAAACGATGTAAAGAATTACTGGAACACCCACCTCAGCAAGAAGTTCTTTGGTAAAGCGGTTAAAGATGTAGCTGACAAGACAGCCAAAGTCACCGTTATCAAGCCTCGTCCTCGGACCTTCAATAAGAACCTATCTTATTTAAAAGGAAAAGCAGCAAAAGAAAGTGATGTCCAATCAGCAGATCATACTCTTAGCAAACCATATTCAACGCCACCTCTGTCAGAGGATGGAATTTCATGGTTGGACAGCTTATTTTCTGGCAAGGAAGGCCATAAAGAAAGCACATGTTTCAGAAATGGATCAGGGAAGGAATCCATTTCAAGCTTCTGGGATGAGGAAATTTCAGCAGCTACGAAAGTAGGGGAGACTTTTGTTGAAGAGAACGAAAGTGACTGGAACCACTTCTCTTTCGATATGGACCTTTGGGATCTTTTAAACGCGTGA 732 0.4481 MDGPSGVRKGAWTREEDVLLRTCIEKYGEGKWHQVPFRSGLNRCRKSCRLRWLNYLRPDIKRGKFKTDEVDLIIRLHKLLGNRWALIAGRLPGRTSNDVKNYWNTHLSKKFFGKAVKDVADKTAKVTVIKPRPRTFNKNLSYLKGKAAKESDVQSADHTLSKPYSTPPLSEDGISWLDSLFSGKEGHKESTCFRNGSGKESISSFWDEEISAATKVGETFVEENESDWNHFSFDMDLWDLLNA* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0895 243 FunFam - 64 132 - -
Vvi14g0895 243 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi14g0895 243 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vvi14g0895 243 FunFam Myb transcription factor 9 61 - -
Vvi14g0895 243 CDD SANT 64 107 IPR001005 -
Vvi14g0895 243 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Vvi14g0895 243 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vvi14g0895 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vvi14g0895 243 SMART sant 61 109 IPR001005 -
Vvi14g0895 243 SMART sant 8 58 IPR001005 -
Vvi14g0895 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 56 IPR017930 -
Vvi14g0895 243 CDD SANT 11 56 IPR001005 -
Vvi14g0895 243 Gene3D - 4 61 - -
Vvi14g0895 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 179 - -
Vvi14g0895 243 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Vvi14g0895 243 Gene3D - 64 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0895 Vvi-Chr14 16884620 16885710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0895 2 136 MYB Transcription Factor Family AT1G66370 66.897 1.13e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g0895 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0895 - K09422 vvi:100243253 501.901