Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0894 ATGGAGGGCTCTTTAGGTCTGCGGAAAGGTGCTTGGACTAGTGAAGAGGATCATCTGCTAAGAAAGTGCGTAGAAAAGTATGGAGAGGGGAAGTGGCATCAGGTTCCTTTTCGAGCAGGCTTGAACCGTTGCCGGAAAAGCTGTAGACTGAGGTGGTTGAACTATCTGAAGCCCGATATCAAAAGAGGGAAATTCACGGCTGATGAAGTTGATCTCATGATGAGGCTCCACAAGCTGTTAGGCAACAGGCAAGCTCAATGGGCATTGATCGCAGGTAGACTTCCAGGAAGAACATCAAACGATGTGAAGAATTATTGGAACACCCATCTGCGCAAGAAGATGGTGAAAGATGAAGTTGAGGAGACAGTGAAAATCAATGCTATAAGGCCTCGTCCTCGGACCTTCACTAAGAACCTATACTGGTTAGAAAGAAAAGAACTTCTAGAGAATGATCAATCAGAACTTCATATTCCTCGCAAACCCTTTTCCACGACCCCTCCATCAGAGGATGGACTGAACTCATGGTGGGAAAGCTTATTTTCTGACAAGGAAGAGAATAAAGAAATCACGTGTTCCATAGAGAGGTCAGCAAATGAGTCCATTTCTTGCCTCTGGGATGAACAAATTGCAGCAATGCCAGAAGTAGGGAAGACTTCTATTACAAATGGCCAAATTGAATGGACCGATTGCTCTTTCGATATGGACCACCTCTGGGATCTCATAAATGCATGA 732 0.4481 MEGSLGLRKGAWTSEEDHLLRKCVEKYGEGKWHQVPFRAGLNRCRKSCRLRWLNYLKPDIKRGKFTADEVDLMMRLHKLLGNRQAQWALIAGRLPGRTSNDVKNYWNTHLRKKMVKDEVEETVKINAIRPRPRTFTKNLYWLERKELLENDQSELHIPRKPFSTTPPSEDGLNSWWESLFSDKEENKEITCSIERSANESISCLWDEQIAAMPEVGKTSITNGQIEWTDCSFDMDHLWDLINA* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0894 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 177 - -
Vvi14g0894 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 114 IPR017930 -
Vvi14g0894 243 Gene3D - 6 62 - -
Vvi14g0894 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Vvi14g0894 243 CDD SANT 11 56 IPR001005 -
Vvi14g0894 243 CDD SANT 64 110 IPR001005 -
Vvi14g0894 243 ProSiteProfiles Myb-like domain profile. 57 110 IPR001005 -
Vvi14g0894 243 Pfam Myb-like DNA-binding domain 62 110 IPR001005 -
Vvi14g0894 243 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vvi14g0894 243 SUPERFAMILY Homeodomain-like 6 106 IPR009057 -
Vvi14g0894 243 Gene3D - 63 133 - -
Vvi14g0894 243 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi14g0894 243 FunFam Myb transcription factor 9 61 - -
Vvi14g0894 243 SMART sant 8 58 IPR001005 -
Vvi14g0894 243 SMART sant 61 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0894 Vvi-Chr14 16642727 16645352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0894 2 180 MYB Transcription Factor Family AT1G66370 51.429 4.10e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g0894 Myb_DNA-binding 6.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0894 - K16166 vvi:100265568 504.597