Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0892 ATGGAGCACCTCCATGGCCTGCTCAGAATTCATGTCCACAGAGGCGTCAATCTCGCAAAGAGAGACGTTCTTAGCAGCGACCCCTACGTCATTGTTCGAATGGGCAAACAGAAACTGAAGACTCGCGTGGTGAATAAGAATGTAAATCCCGAGTGGAATGAAGACTTAACCCTCTCTGTTGACGATACAAATCTTCCAGTCAAGATTTTTGTGTATGACAGAGACACATTCAGTCTGGATGACAAAATGGGGGACGCAGAGTTTCAAATCGGCCCCTTCGTAGAAGCGCTAAGGATGGAGTTGAATGGGCTTCCAAGTGGAACCATAATAACAAGAGTTCAACCCAACAGGGAAAATTGCCTCGCAGAAGAGAGCTGCATTATCTGGACCGAAGGGAAGGTGGTCCAAAATCTGGTTCTCAGGCTCAGAAATGTCGAGAGTGGTGAAGTGGAACTCCAATTACAGTGGATTGATATTCCGGGCTCCAGGGGCTTATAG 498 0.4739 MEHLHGLLRIHVHRGVNLAKRDVLSSDPYVIVRMGKQKLKTRVVNKNVNPEWNEDLTLSVDDTNLPVKIFVYDRDTFSLDDKMGDAEFQIGPFVEALRMELNGLPSGTIITRVQPNRENCLAEESCIIWTEGKVVQNLVLRLRNVESGEVELQLQWIDIPGSRGL* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0892 165 SMART C2_3c 7 102 IPR000008 -
Vvi14g0892 165 CDD C2_ArfGAP 6 148 - -
Vvi14g0892 165 Gene3D C2 domain 2 163 IPR035892 -
Vvi14g0892 165 Pfam C2 domain 6 92 IPR000008 -
Vvi14g0892 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vvi14g0892 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 114 IPR035892 -
Vvi14g0892 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0892 Vvi-Chr14 16580193 16581677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0892 38 165 C2H2 Transcription Factor Family AT1G70790 59.231 7.74e-53 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0892 - - vvi:100260351 331.257