Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0883 ATGGCCATTAACAAGCGTGAGCGTGCTTCATGCGCGAGTCGTTTTATTGAGCTTTTGGGGTCTGATGCTGCTGAGGCTCAGGCATCAAAAATTCTTGCCGGGTTGGGTTTCACTAAGGATATGCAGGGTCGTGCAACCCGGTCATTTAGTGGTGGGTGTAGGATGAGAATTTCATTGGCTAGGGCACTATTTGTGCAGCCAACTATTCTATTGCTTGATGAACCCACCAACCATCTTGACCTGAGGTCTGTTCTCTGGTTAGAAGAGTACTTGTGCCGGTGGAAGAAAACTCTTCTTGTCGTCTCGCATGATCGGGATTTTCTTAACACGCGTCTCAAAGAGATGAACAAAAAGATTTACAAGATTGGAAAGGCTGGCCAAGAATCCCATTCTGCCATGACTGAGTTTGACAGCACCGTGAAGGGTATTACCCCAATAGGAGGATTCCCACATTATGGGGGCGGTAAAAGATGA 474 0.4705 MAINKRERASCASRFIELLGSDAAEAQASKILAGLGFTKDMQGRATRSFSGGCRMRISLARALFVQPTILLLDEPTNHLDLRSVLWLEEYLCRWKKTLLVVSHDRDFLNTRLKEMNKKIYKIGKAGQESHSAMTEFDSTVKGITPIGGFPHYGGGKR* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0883 157 Pfam ABC transporter 23 77 IPR003439 GO:0005524
Vvi14g0883 157 Pfam Ribosomal protein L3 113 153 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vvi14g0883 157 Gene3D - 7 139 IPR027417 -
Vvi14g0883 157 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 16 112 - -
Vvi14g0883 157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 109 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0883 Vvi-Chr14 16328469 16329308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0883 114 153 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 75.000 7.74e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0883 K06184 - vvi:109123850 204.912