Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0873 ATGGCTACTTCCTTGGATATGTCACTTGATGATATAATAAAGAGGAGTAACAGCGAGAGAGTTAGAGGACGGGGTAGAGCTCGCCGTGGTCGAGGGCCAATAGGAGGGTCTTTTAACGGTGGAAGAATGTCAGGAATTCCTCCTCGTAGAGGTCCTCTTAGGGTGAATGCTCGGCCATCATCTTACGCAATTGCCAAGTCATCCCGCAGAACCAAGATTCCATGGCAGCATGATCTGTTTGAAGATAGCCTTCGAGCTGCAGGGTTGCCAGGTTTAGAAGCTGGCACAAAGTTGTATATTTCCAACCTGGACTATGGTGTGACCAATGAAGATATAAGGGAACTTTTCTCTGAGATTGGAGACATAAAAAGATATGCAGTTCATTATGAGAAAAATGGACGCCCAAGTGGTTCAGCTGAAGTAGTTTATACCAGAAGAAGTGATGCATTTGCTGCTGTTAAACGATATAATAATGTTCTTTTGGATGGAAAACCTATGAAGATTGAAATTATAGGAAGTGATTCAGACATGCCTGTTTCTGCTCGTGTGAATGTAATTGGAGGGGTAAATGGAAAGAGGAGAAGGACAGTTGTTATGACGCCTGGAGTGGGTCATGCCAGAGGCTCCACTGCAATCAATCGTAGTTCTAGTCGAAGGGGTCGTGGGGGTTTGAGCAATGGCCGTGGGCGTGGCCGTGCTGGTAGTCGGGGTCGTGGGCGTGGCCGTGGGAGGAAGCAACCTGTTGAGAAATCAGCTGTTGAACTCGACAAAGAACTGGACAATTACCATGCTGAAGCCATGCACACTTGA 810 0.4679 MATSLDMSLDDIIKRSNSERVRGRGRARRGRGPIGGSFNGGRMSGIPPRRGPLRVNARPSSYAIAKSSRRTKIPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEIGDIKRYAVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMPVSARVNVIGGVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGLSNGRGRGRAGSRGRGRGRGRKQPVEKSAVELDKELDNYHAEAMHT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0873 269 CDD RRM_THOC4 96 170 - -
Vvi14g0873 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Vvi14g0873 269 SMART rrm1_1 97 169 IPR000504 GO:0003723
Vvi14g0873 269 SUPERFAMILY RNA-binding domain, RBD 22 170 IPR035979 GO:0003676
Vvi14g0873 269 MobiDBLite consensus disorder prediction 16 55 - -
Vvi14g0873 269 SMART FoP_duplication_2 199 269 IPR025715 -
Vvi14g0873 269 Gene3D - 92 172 IPR012677 -
Vvi14g0873 269 MobiDBLite consensus disorder prediction 203 251 - -
Vvi14g0873 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Vvi14g0873 269 Pfam C-terminal duplication domain of Friend of PRMT1 208 264 IPR025715 -
Vvi14g0873 269 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0873 Vvi-Chr14 16102579 16115841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0873 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 1.06e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0873 K12881 - vvi:100257009 465.692