Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0827 ATGGGAAGGCAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGACCATGGACGGCTGAAGAGGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAACTTGCAGGACTGTTAAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACAAACTATCTGAGGCCAGACTTGAAAAGAGGTCTGTTGTCAGATTTTGAAGAGCAGATGGTTATTGATCTCCATGCTCAACTCGGCAACAGATGGTCCAAGATTGCTTCTCATCTACCAGGAAGAACCGATAACGAAATCAAGAACCATTGGAATACCCACATCAAGAAAAAACTTAAAAAGATGGGTATTGATCCTCTGACCCACAAGCCATTAATCCCCGCTGCAACTGCCCAACCTCAACAACAGCAATGCCAACAAAAAGAAGAAATGGAAAAAACCAAGGAATCTGAGACACCATTAGAATCATCAATTGTTGAGAGCAAAGAAGAAGACAAGAGCATGTCAAGCCCGCTTGAGAACTCCATGGAAATCATGAATGGCTTCTGTACAGATGAAGTTCCATTGATTCAACCCCATGAGATTCTGGTTCCATGTGATCCCACTTCATCAACTTCTTCATCCTCATCTTCTTCTTCATCTGCTTCGTCCATGATCCTTGAAGACTTGCAGTTTCTCGACTTTGACTGGCATTGCGACTACAACAACGATTTGGGCTTCTGGGATGATGCCTTCACTAGTTGGGATTTGTTCATTGACGATGATGGTGACAGAAAGCTCACTATTGACCCTCCCCTCCCCCACTATCAAAGACTGCCTGTGGATCCAGAATCTCGTTATTCTGAGCAGCTCTTGTGA 870 0.4471 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSDFEEQMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHKPLIPAATAQPQQQQCQQKEEMEKTKESETPLESSIVESKEEDKSMSSPLENSMEIMNGFCTDEVPLIQPHEILVPCDPTSSTSSSSSSSSSASSMILEDLQFLDFDWHCDYNNDLGFWDDAFTSWDLFIDDDGDRKLTIDPPLPHYQRLPVDPESRYSEQLL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0827 289 Gene3D - 71 116 - -
Vvi14g0827 289 Gene3D - 11 67 - -
Vvi14g0827 289 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi14g0827 289 CDD SANT 16 61 IPR001005 -
Vvi14g0827 289 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi14g0827 289 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi14g0827 289 FunFam MYB transcription factor 11 67 - -
Vvi14g0827 289 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi14g0827 289 Pfam Myb-like DNA-binding domain 74 111 IPR001005 -
Vvi14g0827 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi14g0827 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi14g0827 289 MobiDBLite consensus disorder prediction 145 174 - -
Vvi14g0827 289 CDD SANT 74 112 IPR001005 -
Vvi14g0827 289 SMART sant 13 63 IPR001005 -
Vvi14g0827 289 SMART sant 66 114 IPR001005 -
Vvi14g0827 289 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 218 - -
Vvi14g0827 289 FunFam Myb transcription factor 71 133 - -
Vvi14g0827 289 MobiDBLite consensus disorder prediction 134 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0827 Vvi-Chr14 14227704 14229484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0827 1 259 MYB Transcription Factor Family AT1G66230 59.206 1.17e-100 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g0827 Myb_DNA-binding 7.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0827 K09422 - vvi:100265304 563.148