Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0800 ATGCAATCCTGGTTTGTTGGTATGTTTGGTTTATTTGGTGCGAGACATCAAGTGCTGGGTCCAAGTGACAACCTAATTAGGAAGTTCATAATACTAAATTATTGTTCATCATGCTTTACTTCCACTTCTGCTGACATTTTCTTTTCTAATGTAAATTTCAGGTATATGAAATCTAGTTTTGTCATTGATTTAATTTGCTGTTTGCCTTGGGATATTATTTACAAGGCTTGTGGGAGAAAAGAAGAAGTGAGGTACCTCTTATGGATTAGGTTGATTAGGGTGTGCAAAGTCACAGATTTTTTCCAAAACTTGGAAAAGGACACACGGATCAATTATATGTTTACCAGGATTCTGAAACTTATTGCTGTTGAACTCTATTGCACGCATACAGCAGCTTGTGTCTTTTACTATTTGGCTACAACACTTCCCCAATCTGAAGAGGGGTACACATGGATTGGAAGTTTAAAGCTGGGGGACTACAGTTACTCTCACTTTAGAGAGATTGATATCTGGAAGCGGTACACAACATCTTTATATTTTGCAATCATCACAATGGCCACTGTTGGTTACGGGGATATACATGCTGTAAATCTGAGAGAAATGATTTTTGTCATGATTTATGTGTCTTTTGACATGATTCTTGGTGCTTACTTGATCGGTAACATGACAGCCTTAATAGTTAAAGGATCAAAAACTGAAAGATTTAGGGATAAGATGACTGATGTCATCAAATATATGAACAGAAACAGACTTGATAGGGACGTTCGCAATCAGATCAAAGGCCACCTACGCTTACAGTATGAGAGTGGCTACACTGAAGCTTCTGTTATTCAGGATCTTCCTATCTCTATTCGAGCTAAGATTGCCCAAACTTTATATAAGCCATTGGTTGAAAAGGTTTCTCTTTTTAGGGGATGCTCTTTGGAACTCATCAATCAAATTGTAATCAGAGTTCATGAGGAGTTTTTTCTTCCAGGTGAAGTGATAATGGAGCAGGGAAATGTGGTAGATCAACTTTATTTTGTCTGTCATGGAATGCTGGAAGAGATAGGCATTGGGGCAGATGGATCAGAAGAAACAGTTTTGCCTCTGCAACCTAACAGCTCCTTTGGAGAAATTTCAATTCTTTGCAACATTCCTCAACCATATACAGTTCGAGTTCTTGAATTGTGTAGGCTTCTGCGCCTTGATAAACAATCTTTTACAGATATTCTTGAAATATATTTTTATGATGGGCGGAGAATCTTGAACAACCTTCTAGAGGGAAAGGAATCAAATCTTCGTGTCAAGCAACTGGAGTCAGATATCACATTTCATATTGGTAGGCAAGAAGCTGAACTTGCTTTAAGGGTAAACAGTGCTTCTTATCATGGGGATCTATATCAGCTAAAGAGTTTGATTCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGATCACCTTTGCATCTTGCATCAGCAAGAGGATTTGAAGATATTGTAACTTTCCTTATACAAGAAGGTGTGGATGTCAATATTTCAGATAATTTTGGAAACACGCCCTTATTAGAAGCCATCAAGAATGCACATGATCGCGTTGCTTCTTTGCTTGTTAATAAAGGGGCCTTGCTGAAGATTGATGATGCTGGTGGTTTTCTGTGTGCGACCATTGCAAGGGGGGATTCAGATTTTCTTAAAAGGATTCTGTCCAATGGCATTGATCCAAACTCCAAAGACTATGATCACAGAACCCCACTTCATGTGGCTGCCTCAGAAGGGTTATATTTTATGGCAAAGTTGCTTTTAGAAGCCAGGGCTAGTGTATTCTCAAAGGACAGATGGGGAAACACCCCACTTGATGAAGGTTGGAAGTGTGGAAACAAGAATCTAATGAAGCTATTGGAAGATGCAAAAGTGGCTCAGCTTTCTGAATTTCCTGACTGCTCTAGAGAGATCACAGATAAAATGCACCCGAGGAAATGTACTGTGTTCCCTTTCCACCCATGGGATCCGAAAGAACATAAAAGGCCTGGCATCATGTTATGGGTCCCTCAAACCATTGAAGAGCTGATCAAGACTGCAACAGAGGGGCTACAATTTTCAAGTGAATCCTGTATATTATCAGAGGATGGAGGTAAAATTTTGGATGTAGACATGATAAGCGATGGTCAGAAGCTATATTTGTTATGTGAAACACTAGATATTTAG 2193 0.3922 MQSWFVGMFGLFGARHQVLGPSDNLIRKFIILNYCSSCFTSTSADIFFSNVNFRYMKSSFVIDLICCLPWDIIYKACGRKEEVRYLLWIRLIRVCKVTDFFQNLEKDTRINYMFTRILKLIAVELYCTHTAACVFYYLATTLPQSEEGYTWIGSLKLGDYSYSHFREIDIWKRYTTSLYFAIITMATVGYGDIHAVNLREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTERFRDKMTDVIKYMNRNRLDRDVRNQIKGHLRLQYESGYTEASVIQDLPISIRAKIAQTLYKPLVEKVSLFRGCSLELINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGMLEEIGIGADGSEETVLPLQPNSSFGEISILCNIPQPYTVRVLELCRLLRLDKQSFTDILEIYFYDGRRILNNLLEGKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGRSPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKIDDAGGFLCATIARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEARASVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSREITDKMHPRKCTVFPFHPWDPKEHKRPGIMLWVPQTIEELIKTATEGLQFSSESCILSEDGGKILDVDMISDGQKLYLLCETLDI* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0800 730 FunFam Gated outwardly-rectifying K+ channel 518 644 - -
Vvi14g0800 730 Gene3D Jelly Rolls 286 425 IPR014710 -
Vvi14g0800 730 SMART cnmp_10 302 420 IPR000595 -
Vvi14g0800 730 Pfam Ion transport protein 47 227 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi14g0800 730 SMART ANK_2a 479 508 IPR002110 GO:0005515
Vvi14g0800 730 SMART ANK_2a 609 639 IPR002110 GO:0005515
Vvi14g0800 730 SMART ANK_2a 446 475 IPR002110 GO:0005515
Vvi14g0800 730 SMART ANK_2a 576 605 IPR002110 GO:0005515
Vvi14g0800 730 SMART ANK_2a 542 572 IPR002110 GO:0005515
Vvi14g0800 730 SMART ANK_2a 512 541 IPR002110 GO:0005515
Vvi14g0800 730 SUPERFAMILY Voltage-gated potassium channels 31 227 - -
Vvi14g0800 730 Gene3D - 14 228 - -
Vvi14g0800 730 Pfam Cyclic nucleotide-binding domain 322 406 IPR000595 -
Vvi14g0800 730 SUPERFAMILY Ankyrin repeat 454 632 IPR036770 -
Vvi14g0800 730 Gene3D - 545 639 IPR036770 -
Vvi14g0800 730 ProSiteProfiles Ankyrin repeat region circular profile. 576 608 - -
Vvi14g0800 730 ProSiteProfiles cAMP/cGMP binding motif profile. 302 422 IPR000595 -
Vvi14g0800 730 ProSiteProfiles Ankyrin repeat region circular profile. 479 511 - -
Vvi14g0800 730 ProSiteProfiles KHA domain profile. 655 730 IPR021789 -
Vvi14g0800 730 Gene3D - 443 544 IPR036770 -
Vvi14g0800 730 Gene3D Helix hairpin bin 229 285 - -
Vvi14g0800 730 CDD CAP_ED 302 416 IPR000595 -
Vvi14g0800 730 ProSiteProfiles Ankyrin repeat profile. 479 511 IPR002110 GO:0005515
Vvi14g0800 730 Pfam KHA, dimerisation domain of potassium ion channel 654 723 IPR021789 -
Vvi14g0800 730 PANTHER POTASSIUM CHANNEL AKT1 51 723 IPR045319 GO:0005249|GO:0006813
Vvi14g0800 730 Pfam Ankyrin repeats (3 copies) 454 540 IPR002110 GO:0005515
Vvi14g0800 730 Pfam Ankyrin repeats (3 copies) 554 629 IPR002110 GO:0005515
Vvi14g0800 730 ProSiteProfiles Ankyrin repeat profile. 512 544 IPR002110 GO:0005515
Vvi14g0800 730 SUPERFAMILY cAMP-binding domain-like 230 419 IPR018490 -
Vvi14g0800 730 FunFam Potassium channel KAT2 290 426 - -
Vvi14g0800 730 ProSiteProfiles Ankyrin repeat profile. 576 608 IPR002110 GO:0005515
Vvi14g0800 730 PRINTS EAG/ELK/ERG potassium channel family signature 126 136 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi14g0800 730 PRINTS EAG/ELK/ERG potassium channel family signature 385 393 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi14g0800 730 PRINTS EAG/ELK/ERG potassium channel family signature 174 191 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi14g0800 730 PRINTS EAG/ELK/ERG potassium channel family signature 218 227 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0800 Vvi-Chr14 13205378 13231628 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0800 554 629 Ion Channels AT5G37500 31.633 1.68e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0800 K21867 - vvi:100233111 1321.99