Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0799 ATGTCGATACCGATTCTCGAAGCCTGCAAGAAGAGAAAGAGACGGCCAAAGCTCTTCGGGTTTCACACCTTTGCCGATCCTGGTTGCCCCATCAATCCCACAAGCCATTTTTGCGATAACATTCGAATATTTCTTCGAGAATGCGCTGAGCTCGAAGACTACAATGTTGATGGAATGCCCACTTGGTGTACGCTTCTTGTGAATGAGAACAGAGGCTTTGTGGTTCCTGTATATACCATTGAAGAGAGCGTCAAATACGCTGCGAAGCCTTTCTGCGATCACTGTAGATGCACAGGTTGGAGTAATCACTTTGTTTCGAAGAGAAGATATCATATTATAATTCCTATTGATGACGAGTGGAATAAGCCATTGGATGATGGTGTTTTTGATCTCCAAACCCACTTGCTGCATGGTATGATTCACTGTAATGGGTTTGGTCACCTGCTTTGCATCAACGGGATTGAAGGGGGTTCAGGGTATCTCTGCGGCAGAGAGATCATGGATCTCTGGGATCGAATTTGCACAATCCTTCGAACCCGCAAAATTACAGTGGAGGATTCCTCGAAAAAGCGATTCATGGATCTTCGGTTGCTACATGGAGTTGCATATGGGCATCCCTGGTTTGGTAGATGGGGGTACAGGTTCTGTCATGGAAGTTTTGGCGTTAAGGAACCTAATTACGAAAGAGCAATTGAAATTCTCAGCTCACTGGAACTAGATCAGATCATCGAAGATTTTGGTTGCACAGACAGATGCATGAAAATCAGACAAATTTTTCGATTCTACCGAGATTTGAGTGAGACCCAGTTGATCACACTCAAAGATATCCTCAGGATCATGCTTACTCTCAAATCCCGAGCTCCTGTCCAGAAGAAAATGAACATAGTGCCTGATCTTCCTGCTTCTTCTACTTTGAAACCTTCCACCAGAAGATCCCTACAAAATAGGCCTCCTCTAAAGGATAAAACGATGAAGTTTAAGAAATTCAGTACATTAATCACTAATATGGACAGCCGATGGCCGGCAAGAAGATTAGAATATGCCGCAGATGTGATTGTTAATGCATTGAGGGAAAAGAGAGCAAGCGAGTGTACCCATGATGGAATGACTAGGCAGGAAGTGCGAGACGCAGCTAGAATGCACATTGGTGACACTGGTTTGCTAGATTATGTGCTCAAATCAATGAATAATGTGATAGTTGGAAATCATGTTGTCTGTCGTGCTGTTAACCCAGCCACTCGGGTTTTAGAATACACACTTAAGGAACTTGGTAAAGGCACTCTAGTCAGTGAATTGGAATCAGAAATGCTTCCCAAGCCATTTCCAGAGCAATCTATAGTACCTGGTGCTGATGTATACAACGATGTGATTTATTTGTATAGGAATGTGCTATTGAATTACCCTGACTCGGAATTGGTTGAATTAGCAACTAGGGCGGTTCTGGACAGCAAGCACTTTGTAAAGGAGTGGCCTTTTAGTGATGAAGACGATCAGCTACTGAGGTTCGTATGCCATATGATGCCAAGTTTGAGTGAGCTAGAAATTTTTACAAGGGAGTTGCCTCCTGGAGAGTTTATTGTGGTTCCACCATATGCTACAGTTGGTGAGCTGAAGGAAACAGTTGAGAGGACATTGAGGGATACTTACTGTATTATGGAGCAGGTGGTGGTGACTGAGATTGAAGACATGGAGGGAATGACAGATGAGGAAGTGCTTTTTGGCACGATTGAGTCAGGTTCTGAAGTTTGGATGAGAGGGACTGGGATGGATTTGGAAGCTGAATTGAAGTATGAAGGTGGGTCTGATAATTGGAGAGTGAGTTGTGAATGTGGGGCTTTAGATGATGATGGGGAGAGGATGGTGGCTTGTGACATTTGTGAGGTCTGGCAGCACACTGTCTGCAGTGGCATTGATGATTCTGAGACTGTGCCACCCCTGTTTGTTTGCCCCAAATGCTGTGCCTTGCTTGTGCCTGCAAGAAGCGAGTCTTCTGATTGCGGACGCGTGCAGTTGGCTCCAGTTTATCAGTTTGGGATGGAGTTACTGTACTAA 2052 0.4444 MSIPILEACKKRKRRPKLFGFHTFADPGCPINPTSHFCDNIRIFLRECAELEDYNVDGMPTWCTLLVNENRGFVVPVYTIEESVKYAAKPFCDHCRCTGWSNHFVSKRRYHIIIPIDDEWNKPLDDGVFDLQTHLLHGMIHCNGFGHLLCINGIEGGSGYLCGREIMDLWDRICTILRTRKITVEDSSKKRFMDLRLLHGVAYGHPWFGRWGYRFCHGSFGVKEPNYERAIEILSSLELDQIIEDFGCTDRCMKIRQIFRFYRDLSETQLITLKDILRIMLTLKSRAPVQKKMNIVPDLPASSTLKPSTRRSLQNRPPLKDKTMKFKKFSTLITNMDSRWPARRLEYAADVIVNALREKRASECTHDGMTRQEVRDAARMHIGDTGLLDYVLKSMNNVIVGNHVVCRAVNPATRVLEYTLKELGKGTLVSELESEMLPKPFPEQSIVPGADVYNDVIYLYRNVLLNYPDSELVELATRAVLDSKHFVKEWPFSDEDDQLLRFVCHMMPSLSELEIFTRELPPGEFIVVPPYATVGELKETVERTLRDTYCIMEQVVVTEIEDMEGMTDEEVLFGTIESGSEVWMRGTGMDLEAELKYEGGSDNWRVSCECGALDDDGERMVACDICEVWQHTVCSGIDDSETVPPLFVCPKCCALLVPARSESSDCGRVQLAPVYQFGMELLY* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0799 683 ProSitePatterns Zinc finger PHD-type signature. 608 652 IPR019786 -
Vvi14g0799 683 SUPERFAMILY FYVE/PHD zinc finger 597 656 IPR011011 -
Vvi14g0799 683 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 665 - -
Vvi14g0799 683 SMART PHD_3 607 653 IPR001965 -
Vvi14g0799 683 CDD PHD_MMD1_like 607 652 - -
Vvi14g0799 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 655 IPR013083 -
Vvi14g0799 683 Pfam PHD-finger 608 653 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0799 Vvi-Chr14 13171184 13173463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0799 10 658 PHD Transcription Factor Family AT5G22260 34.468 1.32e-119 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi14g0799 PHD 3.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0799 - - vvi:100248053 1420.99