Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0789 ATGACATCTGGTCAAGATGATGGATTGCATCTTGAGGTCACTTTGACTGAGGAAGAAATAGAAGAGTTAATTGCTGAATTCTTGGATGTTGAGAGTAAGGCTGCAGAGGCCCAAGAATCACTTGAAGAGGAATCACTTTCCAAATTGGAGATTGAAGTTAGAGAAGAGTTGGCACAAACCCTTCAAGGGAATGATTTGGAAACGGCTGTTGCAGAGGAAATGGCAAATTTTAAGGAAGAGTGGGAAGCTGTGCTTGATGAACTTGAGACTGAGAGTGCTCACTTGTTGGAACAACTTGATGGGGCTGGTATTGAATTACCAAGTCTCTATAAGTGGATTGAAAGTCAGGCTCCTAATGGTTGTTGCACTGAAGCTTGGAAACAAAGGGTACATTGGATAGGATCTCAGGTGACTGGTGATACTACTGAATCAATCATAGAAGCTGAAAAGCATCTCCAAACTGACAGGCCGGTGCGAAGACGACATGGAAAACTATTGGAGGAGGGTGCCAGTGGATATCTGGCAAACAAACTTGCTAGTGATGGGAACAGAGAGGCTGTCACAGAGAATGCAGAAGTGGATTGGTGCTCTTTCAACAAATGTTTTTCTGATCATGCATCTGAGGATAGTACTTTATTCGGCAGTGAGCACTGGGCTTCTGTGTACTTAGCAAGTACTCCACAGCAAGCGGCAGTGATGGGGCTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATCGATGATATTGATGGCAATTCAAGTGATCCATTTGTTGCAGATGCCATAGCGAATGAAAGAGCCGTGGATCTTTCTGAAGAACAGAAGAAAAAATTTAAAAAGGTGAAAGAGGAAGATGATGCAAATATAGATCGGAAGCTTCAACTTCATTTGAAACGTAGGAGATATAGAAAGAGAAGTACACAGGAAACCATTCAGAAAGAAGATCGGTTGGCAGAAAACATCTTAGACAATTCTGTGCTTTTGAATGACTACTCTCAGGCTGTTTTGAGAGAGAAAACTCGTGGGGACGGGGTAAGTATATCTAATAATAATGATGATGGTGCATGTCAAAGTTCGAAAACTGAGGTGTCGGAAAGTCTTGAAATGCCTGACACTCTTGACAAAGAAAGGCCTGCAAGTAATGGCAATTCTTCGGTGCTTTCTGGCTCTGTTTTGCCTGATTCAACTGAAACCAAAGGATTCAAGCGTTCACATGACAATGGGGAACTTGATGTTGATAATAAGAGGTTTCGGACTGTTATCATAGATAGTGATGATGAAACTCATGAGGTGGGCAATGTATCCAATTCTCTTGTTAACAATATGACTAAGATGGAGGGTCAGTCTGTTTTGCAAGAAACTGAAGGTGATTTTGTTGGTTCTGGTTCTCTTCCTTCAAAGCATATGAATGGGAATTTTCACTGCACTGCTTGTAATAAAGTGGCTATTGAAGTGCACTGTCATCCTCTTCTGAAAGTAATCATCTGTGGGGATTGCAAATGTTTAATTGAGAGAAAGATGCATGTTAAGGATCCTGATTGCTCTGAGTGTTATTGTGGATGGTGTGGACGGAGCAATGACTTGGTAGGTTGTAAGTCATGTAAAACATTATTCTGTATTACGTGTATAAAGAGGAACATCGGCGAAGAATGCTTGTCAGATGTCAAAGCAAGTGGCTGGCAATGTTGTTGCTGCTCTCCAAGTCTTCTGCAACAATTGACTTCGGAGTTAGAAAAAGCCATTGGATCTAGTAGTCTGACAGTTTCTAGCTCTGATAGTGATTCAGATGATTCAGATGAAGATATCAATGTTGCAATCAGCTCCAAACGAAGAAGGAAAAAGAAAATTCGGAGGATTCTTGATGATGCTGAGTTAGGGGAAGAGACCAAAAGAAAAATTGCAATCGAAAAGGAACGGCAAGAACGTCTCAAGTCTCTACAAGTGCAGTTTTCCGAGAAATCCAAGATGATGAATGCTGCAAGTTGCAATGGTAATTTATCAGAGGATACTAGTGTTGAAGTTCTAGGTGATGCTTCGAAAGGTTATATAGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTGAGGATTCCTCCAAGCATCTCTGCCAAATTGAAAGTCCATCAGATCACAGGGATACGATTTATGTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGGGGCTTGGTAAAACTTTTCAGGTGATAGCTTTCTTATATACTGCAATGAGAAGTATTGACTTAGGATTAAGAACTGCACTTATCGTTACACCTGTAAATGTGCTGCACAATTGGCGACAGGAGTTCATAAAATGGAGACCTTTGGAATTGAAGCCTCTTCGTGTCTTCATGTTGGAAGATGTTTCAAGGGAGAGAAGAGCAGAATTGCTTGCAAAGTGGAGAGCTAAGGGTGGTGTCTTTTTAATCGGCTATAGTGCATTCAGAAACTTATCCCTTGGGAAGAATGTGAAAGATCGCCATATGGCTAGAGAAATTTGCTATGCCCTGCAGGATGGACCAGATATACTGGTCTGTGATGAGGCCCACATGATCAAGAACACCAGGGCTGATACAACTCAAGCCTTGAAACAAGTGAAGTGCCAGAGGCGGATTGCATTGACTGGATCACCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGATTCCTTGGAAGTAGCCATGAATTCCGAAACCGCTTCCAAAATCCTATAGAGAATGGACAACATATGAACTCCACATCAGATGATGTAAAAATAATGAATCAGAGGTCTCATATCCTCTATGAACAACTAAAAGGGTTTGTCCAAAGAATGGACATGAGTGTGGTCAAGAATGACTTGCCCCCTAAAACTGTTTTTGTAATGGCTGTAAAGCTTTCTTCCTTACAACGGAAATTATACAAAAGATTCCTTGATGTGCATGGCTTCACAAATGACAAGGTTTCTAGTGACAAGATAAGGAAGAGATGTTTTTTTGCTGGGTATCAGGCCTTAGCTCAGATATGGAACCATCCTGGGATCTTGCAATTGACAAAAGAAGAAAAAGACTATGCAAGACGTGAAGATGGTGTTGAGAATTTTCTTGCAGATGACAGCTCTAGTGATGATAATATAGATTACAATACTGTTCTTGGAGAGAAGGTGAGGAACAAGAATGAGATTCAACAAGGAAAAGTCGATAGTGGCTTATATCAGAAGGGTTGGTGGAATGATCTTCTCCATGAAAATAATTATAAAGAGGTTGATTACAGTGGCAAAATGGTTTTGCTGCTTGATATCCTAACCATGTGTGCTGATGTGGGTGATAAGGCTCTGGTTTTTAGTCAGAGCTTATCAACTCTAGATCTGATAGAATATTATCTTTCAAAATTATCACGGCAAGGGAAGAAAGGGAAATGTTGGAAGCAAGGAAAAGACTGGTACAGGCTAGATGGAAGAACAGAGGGCTCTGAAAGGCAAAAGCTAGTAGAGAGATTTAATGACCCCTTAAATAAAAGGGTGAAATGCACTTTGATATCCACCCGAGCTGGATCTTTGGGAATCAATCTTCATTCTGCTAACCGTGTCATCATTGTTGATGGATCATGGAATCCAACATATGATCTTCAGGCTATATATCGGGCTTGGAGGTATGGCCAAACTAAGCCAGTGTTTGCTTACCGATTGATGGCTCATGGAACTATGGAAGAAAAAATTTATAAGCGTCAGGTGACAAAGGAAGGCCTTGCTGCCAGGGTGGTCGATAGACAACAAGTACATAGGACTATCTCTAAAGAGGAGATGTTACATCTCTTTGATTTTGGTGATGATGAGAACCCTGATATTTTACCTGAGAGGGGCAAAGAGGAAGAGCATACAACCAACCAAAATATGACTGGTCAAGTTGGAAATTCGCTAAAGGATAAATTATCTCTTTCTCATGGAAGCTGCTCTTCTGACAAGTTAATGGAAAGTTTACTTGTCAGGCATTATCCACGGTGGATTGCTAACTACCATGAACATGAGACCCTTCTGCAAGAGAATGAAGAGGAGAAGCTATCAAAAGAGGAGCAAGACATGGCTTGGGAAGTATATCGGAGAACTTTAGAATGGGAAGAAGTACAGCGAGTACCCCTTGATGAGTCTACATTTGAGCGAAAACCAGCTGTTTCAAATGCAGCCCCCCTTGTAACAGAGAGCATCAGTCTCTCAGAGACCAAGATTAGTAGATTGAGGAATCATTTGGTGCAGCGGAAATGCACCAACCTTTCTCACATGCTGACTCTTAGAAGTCAGGGCACAAAAGTTGGTTGCAGTACTGTATGTGGGGAATGTGCACAAGAAATAAGCTGGGAGGACCTTAATAGGGATGGCAGGGCAGTAAGGTGA 4434 0.4127 MTSGQDDGLHLEVTLTEEEIEELIAEFLDVESKAAEAQESLEEESLSKLEIEVREELAQTLQGNDLETAVAEEMANFKEEWEAVLDELETESAHLLEQLDGAGIELPSLYKWIESQAPNGCCTEAWKQRVHWIGSQVTGDTTESIIEAEKHLQTDRPVRRRHGKLLEEGASGYLANKLASDGNREAVTENAEVDWCSFNKCFSDHASEDSTLFGSEHWASVYLASTPQQAAVMGLKFPGVDEVEEIDDIDGNSSDPFVADAIANERAVDLSEEQKKKFKKVKEEDDANIDRKLQLHLKRRRYRKRSTQETIQKEDRLAENILDNSVLLNDYSQAVLREKTRGDGVSISNNNDDGACQSSKTEVSESLEMPDTLDKERPASNGNSSVLSGSVLPDSTETKGFKRSHDNGELDVDNKRFRTVIIDSDDETHEVGNVSNSLVNNMTKMEGQSVLQETEGDFVGSGSLPSKHMNGNFHCTACNKVAIEVHCHPLLKVIICGDCKCLIERKMHVKDPDCSECYCGWCGRSNDLVGCKSCKTLFCITCIKRNIGEECLSDVKASGWQCCCCSPSLLQQLTSELEKAIGSSSLTVSSSDSDSDDSDEDINVAISSKRRRKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSEKSKMMNAASCNGNLSEDTSVEVLGDASKGYIVNVVREKGEEAVRIPPSISAKLKVHQITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTALIVTPVNVLHNWRQEFIKWRPLELKPLRVFMLEDVSRERRAELLAKWRAKGGVFLIGYSAFRNLSLGKNVKDRHMAREICYALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHMNSTSDDVKIMNQRSHILYEQLKGFVQRMDMSVVKNDLPPKTVFVMAVKLSSLQRKLYKRFLDVHGFTNDKVSSDKIRKRCFFAGYQALAQIWNHPGILQLTKEEKDYARREDGVENFLADDSSSDDNIDYNTVLGEKVRNKNEIQQGKVDSGLYQKGWWNDLLHENNYKEVDYSGKMVLLLDILTMCADVGDKALVFSQSLSTLDLIEYYLSKLSRQGKKGKCWKQGKDWYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFDFGDDENPDILPERGKEEEHTTNQNMTGQVGNSLKDKLSLSHGSCSSDKLMESLLVRHYPRWIANYHEHETLLQENEEEKLSKEEQDMAWEVYRRTLEWEEVQRVPLDESTFERKPAVSNAAPLVTESISLSETKISRLRNHLVQRKCTNLSHMLTLRSQGTKVGCSTVCGECAQEISWEDLNRDGRAVR* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0789 1477 Gene3D - 676 959 IPR038718 -
Vvi14g0789 1477 MobiDBLite consensus disorder prediction 377 397 - -
Vvi14g0789 1477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 727 910 IPR014001 -
Vvi14g0789 1477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1111 1282 IPR001650 -
Vvi14g0789 1477 Coils Coil 1353 1373 - -
Vvi14g0789 1477 Coils Coil 71 105 - -
Vvi14g0789 1477 MobiDBLite consensus disorder prediction 342 409 - -
Vvi14g0789 1477 MobiDBLite consensus disorder prediction 1299 1318 - -
Vvi14g0789 1477 PANTHER RAD54-LIKE 10 1473 IPR044574 GO:0016887
Vvi14g0789 1477 SMART ultradead3 701 922 IPR014001 -
Vvi14g0789 1477 MobiDBLite consensus disorder prediction 343 366 - -
Vvi14g0789 1477 Coils Coil 264 284 - -
Vvi14g0789 1477 CDD ADDz_ATRX 471 567 - -
Vvi14g0789 1477 Pfam Helicase conserved C-terminal domain 1112 1234 IPR001650 -
Vvi14g0789 1477 ProSiteProfiles ADD domain profile. 463 593 IPR025766 -
Vvi14g0789 1477 Coils Coil 13 40 - -
Vvi14g0789 1477 CDD SF2_C_SNF 1102 1245 - -
Vvi14g0789 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 965 1302 IPR027417 -
Vvi14g0789 1477 Gene3D - 970 1320 IPR027417 -
Vvi14g0789 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 959 IPR027417 -
Vvi14g0789 1477 SMART helicmild6 1137 1234 IPR001650 -
Vvi14g0789 1477 Pfam SNF2-related domain 728 1029 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0789 Vvi-Chr14 12730435 12834845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0789 715 1264 RAD5 or RAD16-like Gene Family AT1G02670 25.263 2.12e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi14g0789 SNF2_N 7.3e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0789 K10779 - vvi:100244360 2813.87