Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0784 ATGTCTTCATCTCTACCAGTTCTTCCTACACCTCTAGAAGAGAAGTATCCCAAATTGCCAAATTCTTTTCAGGTTTCTGCAGAAGTGAAAATGATGACAAATCCGATTTCTCCACAAGCACATCAATTGGCGTCCAACAATGGAACTGTTGGCTACATGCTTTCGTCAGATTTTGTTTTCCCTAAAGATACCAATTTATCATCATTTTCTTCTAATAGTAGCGGTTCCCAAAATTCTTTGTTCATTCCTCAGTCATCAACAAATGGAGTATCTTTACCACCAATCAGTTCTTCTGGCATAGAAATACAATCTACACCATCAGTTACTTTCTCCCGAGAGAGGAAAGAAAATTCCTGGTGTACAGATTCACTTAAGGATTTTCTTGATTTTCCTGAAAATGTTCCTATCCAGAATAATAATCAGGTAGAAGGCAGTGGTGGTGGCATGTCATATGAGGACTGTGCTAAGACAACTGATTGGCCGGATTGGGCAGATCAGTTTCTTAATGATGATGATTCTTTGGAGCCTAATTGGAATGGGCTTCTCATTGATGTTGATGTACCAGATCCTGAGTCAAAGTCTGAAATCTGTCAGCACCATCCAGCACAATCTGGAGAAATTTCTGCCGTTCCCAACTCTTTGTCCCCTGCACCCTCATCCAAGCCTCGCATGCGCTGGACACCAGAAATGCATGAGGCCTTTGTGGAGGCTGTCAAACAGCTTGGTGGCAGTGAACGGGCGACTCCAAAGGGAATCTTGAAGCTTATGAATGTTGAAGGTCTGACCATCTATCATGTAAAAAGCCATCTGCAGAAATACAGAACAGCCAGATACAAACCAAAGCTGTCAGAAGGAACTTCAGACAAAAATTTAACTTCAATTGGAGAAATTACGTCACTAGACTTAAAAATGAGCATGGGAATCACCGAAGCATTGCGGCTGCAAATGGAAGTTCAAAAGCAGCTCCACGAACAACTTGAGATTCAGAGAAATTTGCAGTTGCGAATTGAAGAGCAGGCAAAGCACCTTCAAATGATGTTTGAGAAACAGGGAAAGATGGAAGACAAGAAGTTGAAGGTCTCTTCATCCATCCCAGATGAACCCTCTTCTCCAATATCAAATGTGATGCAGCCTTCCCCTGTCAATCACACATCAAAAGTCTCAGAGCAGCCTCATGTTGCATCAGGATTTGATGCTGAAGAAAGTTCTCAGAATGTGGAACAGAAGCAAAAGGCACCTGAAACCAGCGGTTGCGAGTTTATTAACCAAGATAATGGCATGTCCAGTACCCCACCCACAAAGCGAGCAAGAGCAGAAAACTTTTTGAGCTCATGA 1335 0.424 MSSSLPVLPTPLEEKYPKLPNSFQVSAEVKMMTNPISPQAHQLASNNGTVGYMLSSDFVFPKDTNLSSFSSNSSGSQNSLFIPQSSTNGVSLPPISSSGIEIQSTPSVTFSRERKENSWCTDSLKDFLDFPENVPIQNNNQVEGSGGGMSYEDCAKTTDWPDWADQFLNDDDSLEPNWNGLLIDVDVPDPESKSEICQHHPAQSGEISAVPNSLSPAPSSKPRMRWTPEMHEAFVEAVKQLGGSERATPKGILKLMNVEGLTIYHVKSHLQKYRTARYKPKLSEGTSDKNLTSIGEITSLDLKMSMGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQAKHLQMMFEKQGKMEDKKLKVSSSIPDEPSSPISNVMQPSPVNHTSKVSEQPHVASGFDAEESSQNVEQKQKAPETSGCEFINQDNGMSSTPPTKRARAENFLSS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0784 444 FunFam Myb family transcription factor 220 278 - -
Vvi14g0784 444 MobiDBLite consensus disorder prediction 201 220 - -
Vvi14g0784 444 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 212 418 IPR044848 GO:0003700
Vvi14g0784 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 278 IPR017930 -
Vvi14g0784 444 Gene3D - 220 279 - -
Vvi14g0784 444 MobiDBLite consensus disorder prediction 201 223 - -
Vvi14g0784 444 NCBIfam myb-like DNA-binding domain, SHAQKYF class 221 275 IPR006447 GO:0003677
Vvi14g0784 444 SUPERFAMILY Homeodomain-like 219 275 IPR009057 -
Vvi14g0784 444 MobiDBLite consensus disorder prediction 363 444 - -
Vvi14g0784 444 Coils Coil 309 329 - -
Vvi14g0784 444 Pfam Myb-like DNA-binding domain 223 274 IPR001005 -
Vvi14g0784 444 MobiDBLite consensus disorder prediction 351 444 - -
Vvi14g0784 444 Pfam MYB-CC type transfactor, LHEQLE motif 306 353 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0784 Vvi-Chr14 12525673 12538889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0784 2 380 G2-like Transcription Factor Family AT4G28610 44.365 6.90e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi14g0784 Myb_DNA-binding 4.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0784 - - vvi:100240786 869.381