Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0769 ATGGGTATCGGTTTAGTCGTCGATGACAAAAGCAAAAAGACGAAGTGCACCGCTCCCAAATCTGATGATATCTACCTCAAGCTCACAGTCAAGTTGTATCATTTTTTGGTACGAAAAACCGGAAGCAAGTTCAATGTTGTGACATTGAAGCGGTTCTTCATGAGCAAGGTTAATAAGTTGCCTTTGTTACTTTCCCGTTTGGTTCGTTTCATGGACGGAAAGAAAGGTAAGATTGTTGTGGTTATTGGTTCTGTTACCGATGATCTCCGAGTATACGAAGTCCTTTATTTGAAAGTGACTATCCTGAGGTTCACAAAGAGAGTAAGGGAAGGGATTGAGAGGTTGATGGTGAATGCTTGA 360 0.4139 MGIGLVVDDKSKKTKCTAPKSDDIYLKLTVKLYHFLVRKTGSKFNVVTLKRFFMSKVNKLPLLLSRLVRFMDGKKGKIVVVIGSVTDDLRVYEVLYLKVTILRFTKRVREGIERLMVNA* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0769 119 SUPERFAMILY Ribosomal proteins L15p and L18e 20 114 IPR036227 -
Vvi14g0769 119 Pfam Ribosomal protein 60S L18 and 50S L18e 8 113 IPR021131 -
Vvi14g0769 119 Gene3D - 1 118 - -
Vvi14g0769 119 PANTHER 60S RIBOSOMAL PROTEIN L18 1 113 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0769 Vvi-Chr14 12098942 12099301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0769 3 114 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 63.393 5.69e-43 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0769 K02883 - vvi:100250430 163.31