Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0750 ATGCAGATCTTTGTTAAGACCCTTACTGGGAAGACTATAACCCTTGAAGTGGAAAGTTCTGATACCATTGACAATGTTAAGGCGAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAACATTCAGAAAGAGTCCACACTCCACCTCGTCCTTCGATTGAGAGGTGGAATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTCTGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAACATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGAATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTCTGACACGATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAACATTCAGAAAGAGTCCACCCTTCATTTGGTTCTCCGGCTGAGAGGTGGAATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTCTGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAACATACAAAAGGAATCCACCCTTCACCTGGTTCTTCGCCTTCGTGGAGGTATGCAGATATTTGTGAAGACCCTGACGGGAAAGACGATCACACTAGAGGTGGAGAGCTCAGACACCATAGATAATGTGAAGGCCAAAATTCAGGACAAGGAGGGGATCCCTCCAGATCAGCAGAGGCTGATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGGACACTTGCTGATTACAACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTTCGTGGGGGGTCTGGGTTCTGA 1152 0.4731 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSGF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0750 383 CDD Ubl_ubiquitin 305 380 - -
Vvi14g0750 383 SUPERFAMILY Ubiquitin-like 151 228 IPR029071 -
Vvi14g0750 383 FunFam Polyubiquitin 3 153 228 - -
Vvi14g0750 383 Gene3D - 77 152 - -
Vvi14g0750 383 Gene3D - 1 76 - -
Vvi14g0750 383 Gene3D - 305 382 - -
Vvi14g0750 383 Gene3D - 153 228 - -
Vvi14g0750 383 Gene3D - 229 304 - -
Vvi14g0750 383 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vvi14g0750 383 SMART ubq_7 229 300 IPR000626 GO:0005515
Vvi14g0750 383 SMART ubq_7 305 376 IPR000626 GO:0005515
Vvi14g0750 383 SMART ubq_7 1 72 IPR000626 GO:0005515
Vvi14g0750 383 SMART ubq_7 77 148 IPR000626 GO:0005515
Vvi14g0750 383 SMART ubq_7 153 224 IPR000626 GO:0005515
Vvi14g0750 383 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Vvi14g0750 383 FunFam Polyubiquitin 3 229 304 - -
Vvi14g0750 383 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Vvi14g0750 383 CDD Ubl_ubiquitin 1 76 - -
Vvi14g0750 383 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Vvi14g0750 383 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vvi14g0750 383 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Vvi14g0750 383 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Vvi14g0750 383 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vvi14g0750 383 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Vvi14g0750 383 CDD Ubl_ubiquitin 153 228 - -
Vvi14g0750 383 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vvi14g0750 383 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Vvi14g0750 383 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vvi14g0750 383 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Vvi14g0750 383 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
Vvi14g0750 383 SUPERFAMILY Ubiquitin-like 303 380 IPR029071 -
Vvi14g0750 383 PANTHER UBIQUITIN 229 306 - -
Vvi14g0750 383 FunFam Polyubiquitin 3 305 380 - -
Vvi14g0750 383 FunFam Polyubiquitin 3 77 152 - -
Vvi14g0750 383 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vvi14g0750 383 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Vvi14g0750 383 FunFam Polyubiquitin 3 1 76 - -
Vvi14g0750 383 CDD Ubl_ubiquitin 77 152 - -
Vvi14g0750 383 SUPERFAMILY Ubiquitin-like 77 152 IPR029071 -
Vvi14g0750 383 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vvi14g0750 383 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vvi14g0750 383 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vvi14g0750 383 CDD Ubl_ubiquitin 229 304 - -
Vvi14g0750 383 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0750 Vvi-Chr14 11519377 11520528 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0750 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.19e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0750 K08770 - vvi:100252768 740.725