Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0741 ATGTTTGTTCATTTGGGCTTCTTTATGGTTTTTGGTAGGATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCTGATACCATTGACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAACATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAATGCAAATATTTGTCAAAACACTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTCAGATACAATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTGAGAGGTGGCATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCAGACACCATTGATAATGTCAAAGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGACATTGGCTGATTATAACATCCAGAAAGAGTCCACCCTTCACTTGGTTCTCCGTTTAAGAGGCGGCATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCAGACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTTTGAGAGGTGGCATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAAGTTGAGAGTTCAGACACTATCGACAATGTGAAAGCAAAAATCCAGGACAAGGAAGGTATTCCACCCGACCAGCAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAATATACAGAAGGAATCAACCCTTCACCTTGTTCTCCGCCTACGTGGGGGTATGCAGATTTTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCAGACACAATTGACAATGTCAAGGCAAAAATCCAGGACAAGGAAGGCATTCCTCCTGACCAACAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCTGACTACAACATACAGAAAGAATCCACGCTGCACCTTGTTCTTCGCCTTCGTGGAGGTATGCAGATATTTGTGAAGACCCTGACAGGTAAAACTATCACACTTGAGGTGGAGAGCTCTGACACCATAGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATCCCTCCAGATCAGCAGAGGCTCATATTTGCTGGAAAGCAGCTAGAGGATGGGCGGACCTTGGCAGATTACAATATTCAGAAGGAATCTACACTTCATCTTGTTCTTCGACTCCGTGGTGGTGATCCTATGGACGTCAAGAACGACTTTCTCCCAAGCCCAAACCTACCTACCTCTACAACTATAAATATTAAATATTTCCTCTCATCTCATCATTCCAAGCGTCTCTGCGGTCTCCCTGAAAAGCAGTCTTCGTTCCTGTGCTTGTTCATCGACCATTCCCTTTTCCCCAACCGTTCGCTTTTCCCTTTCAAGATGCAGATCTTTGTTAAAACCCTTACTGGGAAGACTATAACCCTTGAAGTGGAAAGTTCTGATACCATTGACAATGTTAAGGCGAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACATTGGCAGATTATAACATTCAGAAAGAGTCCACACTCCACCTGGTCCTTCGTTTGAGAGGTGGAATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTCTGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAACATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGAATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTCTGACACAATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAACATTCAGAAAGAGTCCACCCTTCATCTGGTTCTCCGGCTGAGAGGTGGAATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAAGTGGAGAGCTCTGATACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAACATTCAAAAGGAATCCACCCTTCACCTGGTTCTTCGCCTTCGTGGAGGGATGCAGATATTTGTGAAGACCCTGACGGGAAAGACAATTACACTAGAGGTTGAGAGCTCAGACACTATAGATAATGTGAAGGCAAAAATTCAGGACAAGGAAGGGATCCCTCCAGATCAGCAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGGACTCTTGCTGATTACAACATTCAGAAGGAGTCTACTCTTCACTTGGTTCTTCGTCTTCGTGGGGGGTCTGGCCCGTCTGGGTTCTGA 2988 0.4588 MFVHLGFFMVFGRMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDPMDVKNDFLPSPNLPTSTTINIKYFLSSHHSKRLCGLPEKQSSFLCLFIDHSLFPNRSLFPFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSGPSGF* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 940 965 IPR019954 -
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 268 293 IPR019954 -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 469 546 IPR029071 -
Vvi14g0741 995 CDD Ubl_ubiquitin 318 393 - -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 761 837 IPR029071 -
Vvi14g0741 995 Pfam Ubiquitin family 840 911 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 92 163 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 688 759 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 472 543 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 916 987 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 320 391 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 764 835 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 168 239 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 16 87 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 612 683 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 396 467 IPR000626 GO:0005515
Vvi14g0741 995 Pfam Ubiquitin family 244 315 IPR000626 GO:0005515
Vvi14g0741 995 CDD Ubl_ubiquitin 914 989 - -
Vvi14g0741 995 FunFam Polyubiquitin 3 90 165 - -
Vvi14g0741 995 CDD Ubl_ubiquitin 14 89 - -
Vvi14g0741 995 FunFam Polyubiquitin 3 610 685 - -
Vvi14g0741 995 SMART ubq_7 242 313 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 914 985 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 610 681 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 318 389 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 14 85 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 90 161 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 686 757 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 394 465 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 470 541 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 762 833 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 166 237 IPR000626 GO:0005515
Vvi14g0741 995 SMART ubq_7 838 909 IPR000626 GO:0005515
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 864 889 IPR019954 -
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 192 217 IPR019954 -
Vvi14g0741 995 FunFam Polyubiquitin 3 166 241 - -
Vvi14g0741 995 CDD Ubl_ubiquitin 610 685 - -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 393 469 IPR029071 -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 602 685 IPR029071 -
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 344 369 IPR019954 -
Vvi14g0741 995 PRINTS Ubiquitin signature 66 87 IPR019956 -
Vvi14g0741 995 PRINTS Ubiquitin signature 24 44 IPR019956 -
Vvi14g0741 995 PRINTS Ubiquitin signature 45 65 IPR019956 -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 685 761 IPR029071 -
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 116 141 IPR019954 -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 394 469 IPR000626 GO:0005515
Vvi14g0741 995 FunFam Polyubiquitin 3 318 393 - -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 610 685 IPR000626 GO:0005515
Vvi14g0741 995 CDD Ubl_ubiquitin 242 317 - -
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 788 813 IPR019954 -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 762 837 IPR000626 GO:0005515
Vvi14g0741 995 CDD Ubl_ubiquitin 686 761 - -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 914 989 IPR000626 GO:0005515
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 912 989 IPR029071 -
Vvi14g0741 995 FunFam Polyubiquitin 3 394 469 - -
Vvi14g0741 995 FunFam Polyubiquitin 3 14 89 - -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 14 89 IPR000626 GO:0005515
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 712 737 IPR019954 -
Vvi14g0741 995 Gene3D - 686 761 - -
Vvi14g0741 995 Gene3D - 607 685 - -
Vvi14g0741 995 Gene3D - 10 89 - -
Vvi14g0741 995 Gene3D - 242 317 - -
Vvi14g0741 995 Gene3D - 838 913 - -
Vvi14g0741 995 Gene3D - 167 241 - -
Vvi14g0741 995 Gene3D - 914 993 - -
Vvi14g0741 995 Gene3D - 90 166 - -
Vvi14g0741 995 Gene3D - 394 469 - -
Vvi14g0741 995 Gene3D - 762 837 - -
Vvi14g0741 995 Gene3D - 470 554 - -
Vvi14g0741 995 Gene3D - 318 393 - -
Vvi14g0741 995 FunFam Polyubiquitin 3 470 545 - -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 166 241 IPR000626 GO:0005515
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 40 65 IPR019954 -
Vvi14g0741 995 FunFam Polyubiquitin 3 242 317 - -
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 420 445 IPR019954 -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 90 165 IPR000626 GO:0005515
Vvi14g0741 995 FunFam Polyubiquitin 3 762 837 - -
Vvi14g0741 995 CDD Ubl_ubiquitin 470 545 - -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 242 317 IPR000626 GO:0005515
Vvi14g0741 995 CDD Ubl_ubiquitin 166 241 - -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 12 89 IPR029071 -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 165 241 IPR029071 -
Vvi14g0741 995 CDD Ubl_ubiquitin 762 837 - -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 317 393 IPR029071 -
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 636 661 IPR019954 -
Vvi14g0741 995 PANTHER UBIQUITIN 394 474 - -
Vvi14g0741 995 FunFam Polyubiquitin 3 914 989 - -
Vvi14g0741 995 FunFam Polyubiquitin 3 686 761 - -
Vvi14g0741 995 CDD Ubl_ubiquitin 394 469 - -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 837 913 IPR029071 -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 686 761 IPR000626 GO:0005515
Vvi14g0741 995 ProSitePatterns Ubiquitin domain signature. 496 521 IPR019954 -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 318 393 IPR000626 GO:0005515
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 89 165 IPR029071 -
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 838 913 IPR000626 GO:0005515
Vvi14g0741 995 ProSiteProfiles Ubiquitin domain profile. 470 545 IPR000626 GO:0005515
Vvi14g0741 995 FunFam Polyubiquitin 3 838 913 - -
Vvi14g0741 995 SUPERFAMILY Ubiquitin-like 241 317 IPR029071 -
Vvi14g0741 995 CDD Ubl_ubiquitin 838 913 - -
Vvi14g0741 995 CDD Ubl_ubiquitin 90 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0741 Vvi-Chr14 11326704 11337173 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0741 914 989 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 8.46e-45 155