Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0720 ATGGCTTCAACCTCCGCTTCATCTTCTACTTCCTCATCCTCTCAATTCACCTACTCAAACGCTTCCTATTTTCCTCTGCCCTTCCACCTTCAACAGTCTGATCCAATGGCCGCTGTTTCTCAGTACCCTAAGCCCTACGTTGCCCCTCCTCCGCCGCCTGTCCAAGTACCTGTGCCACCCGTCAAGATTCCGGCTGTGGCTCCTGTGTACCCGGCTCCGGCGCCTGTTGCCGGCGTCTACTCGCTCCCGCAGTATCAGCAGGCTCAACAGTTATTCCAAAGGGATGCACAGACAATCACTCCTGAAGCTCTTGAGAGTGTAAAAGCTGCCCTTGCCAGCAGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAAAGCAATTCCCCGTAAAGCTGCTGGTCAAACTTGGGAGGATCCAACGCTTGCAGAGTGGCCAGAAAATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTCAATATGGCTAAAGTTGTCAGAGATAAGCGGACAGGAAAAACCAGGGGCTATGGATTTGTTAGCTTTTCCAACCCTTTAGACCTTGCAGCAGCACTTAAGGAAATGAACGGAAAATATGTTGGAAATAGGCCAATCAAACTACGTAAGAGCAATTGGAGGGAGAGGACAGATTTTGAAGCCTTGGAAAGACAAAAGAACCATATACAAAAGAAACCAAAGCTTTCAAAGAAGAGTGTATTACATAAGTGA 774 0.4664 MASTSASSSTSSSSQFTYSNASYFPLPFHLQQSDPMAAVSQYPKPYVAPPPPPVQVPVPPVKIPAVAPVYPAPAPVAGVYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTRGYGFVSFSNPLDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEALERQKNHIQKKPKLSKKSVLHK* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0720 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 221 IPR000504 GO:0003723
Vvi14g0720 257 FunFam RNA-binding protein 42 84 234 - -
Vvi14g0720 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 227 IPR000504 GO:0003723
Vvi14g0720 257 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 75 234 - -
Vvi14g0720 257 CDD RRM_RBM42 143 225 IPR034215 -
Vvi14g0720 257 Gene3D - 84 223 IPR012677 -
Vvi14g0720 257 SMART rrm1_1 150 223 IPR000504 GO:0003723
Vvi14g0720 257 SUPERFAMILY RNA-binding domain, RBD 132 228 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0720 Vvi-Chr14 10641365 10660107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0720 99 244 Eukaryotic Initiation Factors Gene Family AT1G71770 27.152 3.29e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0720 K25079 - vvi:100246648 412.535