Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0714 ATGGGGACAGAACTTATTAGAGCTTGTGTTAAGGAAGAGAATCTTGATGTTCCACCAGGGTTTGAGTCACTAACATCTTTCACCTTGAAGCGGGTAGAAGACAATGAAATCACGACTCCTTGCTTGGCATCCACGAGTGGTTCTGAATCACAGTCGATCAAGATGGAAACTGAGTTTGACATTAGTGATGCTGCAAACATATCGAGGTCCCTTAGGCGTAGACCATGGATAAACTATGGTCAATTTGATAATAGTTCAGATGATGAGTCTGATTCTGAACATCTTAACCAAAATCTTCCTTTCAGGCGGCCTTGTCTTCCCAAAGGGGTTATCCGTGGATGTTTAGAGTGCATTCACTGCCAGAAGGTTACTGCAAGATGGTGTCCAGAAGATGCTTGTAGACCTGATCTTGAGGAGGCTCCTGTATTCTACCCAAGTGAAGAGGAGTTTGAAGACACTTTAAAATACATAGCAAGCATACGATCAAGAGCAGAACCATATGGAATTTGCCGAATTGTTCCTCCATCCTCTTGGAAGCCTCCCTGTCCTCTCAAGGAGAAAAACATTTGGGAGGGTTCTAAGTTTGCTACAAGAATACAGAGGGTGGACAAACTTCAGAACCGGGATTCAATGAGAAAGATGCCGAGGGTCCAAAACCAAACAAGGAGGAAAAGGCGAAGATGTATGGGAACAGGGATAGATTTTGGACCTGGCACTGAAGATGTCTTGGGCACTGCAGATGTCTTGGGCCTTGGTCAAGTTGGATCATGTGATGGGGAGACTTTTGGGTTTGAACCTGGTCCAGAGTTTACATTGGATGCATTTCAGAAATATGCAGATGATTTCAGGGCTCAGTACTTCAGCAAGAATGGAAATGCTACTGATTTGAGAGGTAACATGACTATATCTCAGGAGCTGCGGGAACCATCAGTGGAGAATATTGAGGGTGAATATTGGCGGATTGTAGAGAAACCTACTGAAGAAATTGAGGTGCTTTATGGGGCTGACCTGGAAACTGGGGATTTTGGCAGTGGGTTTCCCAAAGTTTCTAATCCTGTTGGTTCTACCTCAGATGAACGATATACAAAGTCAGGCTGGAACTTGAATAACTTTCCTAGGCTACCTGGCTCTGTTCTCGCTTTTGAAAGTGGTGATATATCTGGAGTATTGGTACCATGGTTGTATATAGGAATGTGCTTTTCCTCGTTCTGTTGGCATGTTGAAGATCATCACTTATATTCGTTGAACTACATGCACTGGGGTGCTCCAAAAATTTGGTATGGTGTCCCAGGGCAAGATGCCCTTAAATTGGAGGCTGCTATGCGAAAGCGTTTACCGGATCTATTTGAGGAACAACCTGATTTACTTCATAAGCTGGTCACCCAACTTTCGCCCTCCATTGTGAAATTTGAGGGGGTACCTGTCTATCGTTGCGTTCAGAATCCTGGAGAGTTTGTTCTGACTTTTCCTCGAGCTTACCATTCAGGGTTCAACTGTGGCTTCAATTGTGCTGAGGCTGTAAATGTAGCTCCTGTTGACTGGTTGCCCCATGGACAGAATGCCATAGAACTTTATCGTGAGCAGGGACGGAAGACATCCATTTCCCATGATAAACTGTTGCTTGGGGCAGCGAGGGAAGCGGTGAGAGCTAATTGGGAACTTAATTTATTGAAGAAGAATACTTTGGATAACTTAAGATGGAAACAGGTCTGTGGAAAGGATGGAATCTTAGCAAAAACGCTCAAGGCACGTGTTGAGACAGAGCATACGAGGAGGGAATATCTTTGCGGTTCTTCACGGGCATTGAAGATGGAGGCTAATTTTGATGCCATCAACGAGAGGGAATGCATTGTATGCCTCTTTGATTTGCATCTGTCAGCAGCAGGTTGTCACTGTTCTCCAGATAGATATGCATGCCTAAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGAATACCAAATTTTTCCTCTTTCGTTATGACATCAGTGAATTAAATATCCTTGTTGAAGCTTTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAGACTAGATCTTGGTCTAGCCCTGAGTTCTTACATTTCCAAAGACAATTTGCAAATTCCTGGGCTTATTGGTAAATTATCTCAGTCCTCGGAAGGAACAGTACTGAATGAGCAGAATTCTAAACCTGTATCATCCTTAAAAAAGGTAGGAGGGGCAGAAAATGCTACTGGTATCCCACTTAATTCAACAGGGAACATTGGTGAGACCTTGTTGCCACAGAAGGAGAAGCCATCCAAAGCTTTATTGGATTTGGAAGGCAGGAAGGTTCCCAGTTCAAGAAACCGAATGGGAAATCAGAGGTTTCAGTTCACGAAGGAAGAATCTGTACTTTCAGCTCCTAGTTTAGGAACCCCAGTTTGTCATCCCTCTCAAGAAGACATGTATAATACTGAAAACTTGGCTTCAGTGAAATCTGAATTGGAGAGGAATACGTTTCCAGGGCATGGTAATGTTATACTTCTCAGTGACGATGAGGGTGAGGAGCTGAAGAAGCCAGTTCTAGATATTGCTAAAGAAACTCCTTTTGCTAAGCATTCAGAATTTTTTGAGAGGCTAACAGATTCTGATGCTAAAGTGAATACCTGTAATTATGTTAAAGATTCAGTTTTAACCACCCCCGCAACTAATGCTGCAGTATTGGGTGAAAGAAATGCTATTTCCTTACTTCATGGTGAAATGAAGAATTGTTCATCTTTCTCCATGTTTGCAAAAGATGAAGACCATGGAAAAGGTGGAATGCTCCTTGGATCGAATCCACTGAACTGTTCTTTTCATGTAGGTTCTACTAGTATAGATTCTGACAGAAATGCTCTGTACTTGTCGACTACAAGAGAGAACAGTGATTTTAATGTGGTAAATGCTGGAAGTTACCTTCAGCATCCGCTGCCACATGTTGGCGGAAAACCTAATGGTGAGGATAACAATGACAAGGTAGGACCTGCTGCTGGCCCAAAGTTAATAGACAATGCTAGAACCATTGCAGGAAACCCATCTTGCAGTCAAAACAATTTGGATAGATATTTCCGCCAGAAGGGACCTCGCATTGCAAAGGTTGTGCGAAGGATCAACTGCATAGTTGAGCCTCTGGAATTTGGAGTTGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGGGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGTCTTACTATGTCTCAGAAATTCTGGATGCAGGATTAGCTGGACCTCTGTTTATGGTTTCCTTGGAGCATTATCCAAGTGAGGTATTCGTCCATGTTTCTGCTGCCAGATGCTGGGAAATGGTGAGAGAGAGAGTCAATCAAGAGATCACGAAGCAACATAAGTTGGGAAGAATGCCACTTCCTCCTTTGCAGCCTCCCGGGAGTCTTGATGGCCTAGAAATGTTTGGTTTTTCTTCACCCACAATCATGCAGGCTGTAGAGGCAATGGACCGAAATCGAGTCTGTACAGAGTACTGGAACTCTCGTCCCTTGATTGCACAACATTCTCAATTAGAAGGTAGTGTTGGAAACCTCCATCGGATGCCTGAGGAACAAAATTATCAGTATGGCCAGAGTAACCATCCGTTTCCGGTTGGAGTTGACACAATACTGAGGGGCCTATTCATGAAAGCAAACCCTGAAGAATTACACTCACTGTATAGCATTTTAAATGACAACAGTAGGCCAACTGGTGATGGTGGGCTGGTGACTCGGCTTCTGAGTGAAGAGATTCACAAGCGGCCTAGGTGA 3816 0.4347 MGTELIRACVKEENLDVPPGFESLTSFTLKRVEDNEITTPCLASTSGSESQSIKMETEFDISDAANISRSLRRRPWINYGQFDNSSDDESDSEHLNQNLPFRRPCLPKGVIRGCLECIHCQKVTARWCPEDACRPDLEEAPVFYPSEEEFEDTLKYIASIRSRAEPYGICRIVPPSSWKPPCPLKEKNIWEGSKFATRIQRVDKLQNRDSMRKMPRVQNQTRRKRRRCMGTGIDFGPGTEDVLGTADVLGLGQVGSCDGETFGFEPGPEFTLDAFQKYADDFRAQYFSKNGNATDLRGNMTISQELREPSVENIEGEYWRIVEKPTEEIEVLYGADLETGDFGSGFPKVSNPVGSTSDERYTKSGWNLNNFPRLPGSVLAFESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGQDALKLEAAMRKRLPDLFEEQPDLLHKLVTQLSPSIVKFEGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQNAIELYREQGRKTSISHDKLLLGAAREAVRANWELNLLKKNTLDNLRWKQVCGKDGILAKTLKARVETEHTRREYLCGSSRALKMEANFDAINERECIVCLFDLHLSAAGCHCSPDRYACLNHAKQLCSCAWNTKFFLFRYDISELNILVEALEGKLSAVYRWARLDLGLALSSYISKDNLQIPGLIGKLSQSSEGTVLNEQNSKPVSSLKKVGGAENATGIPLNSTGNIGETLLPQKEKPSKALLDLEGRKVPSSRNRMGNQRFQFTKEESVLSAPSLGTPVCHPSQEDMYNTENLASVKSELERNTFPGHGNVILLSDDEGEELKKPVLDIAKETPFAKHSEFFERLTDSDAKVNTCNYVKDSVLTTPATNAAVLGERNAISLLHGEMKNCSSFSMFAKDEDHGKGGMLLGSNPLNCSFHVGSTSIDSDRNALYLSTTRENSDFNVVNAGSYLQHPLPHVGGKPNGEDNNDKVGPAAGPKLIDNARTIAGNPSCSQNNLDRYFRQKGPRIAKVVRRINCIVEPLEFGVVISGKLWCNRQAIFPKGFRSRVKYISVLDPTNMSYYVSEILDAGLAGPLFMVSLEHYPSEVFVHVSAARCWEMVRERVNQEITKQHKLGRMPLPPLQPPGSLDGLEMFGFSSPTIMQAVEAMDRNRVCTEYWNSRPLIAQHSQLEGSVGNLHRMPEEQNYQYGQSNHPFPVGVDTILRGLFMKANPEELHSLYSILNDNSRPTGDGGLVTRLLSEEIHKRPR* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0714 1271 ProSiteProfiles FYR domain FYRC motif profile. 1094 1184 IPR003889 GO:0005634
Vvi14g0714 1271 Gene3D Cupin 125 510 - -
Vvi14g0714 1271 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Vvi14g0714 1271 SMART cupin_9 360 526 IPR003347 -
Vvi14g0714 1271 FunFam Putative lysine-specific demethylase JMJ16 1040 1178 - -
Vvi14g0714 1271 Pfam JmjC domain, hydroxylase 393 509 IPR003347 -
Vvi14g0714 1271 Pfam F/Y-rich N-terminus 1047 1089 IPR003888 GO:0005634
Vvi14g0714 1271 SMART fyrc_3 1098 1195 IPR003889 GO:0005634
Vvi14g0714 1271 ProSiteProfiles JmjN domain profile. 140 181 IPR003349 -
Vvi14g0714 1271 ProSiteProfiles FYR domain FYRN motif profile. 1034 1092 IPR003888 GO:0005634
Vvi14g0714 1271 PANTHER LYSINE-SPECIFIC DEMETHYLASE 133 1136 - -
Vvi14g0714 1271 Pfam jmjN domain 141 174 IPR003349 -
Vvi14g0714 1271 Gene3D - 1042 1178 - -
Vvi14g0714 1271 MobiDBLite consensus disorder prediction 211 231 - -
Vvi14g0714 1271 SUPERFAMILY Clavaminate synthase-like 326 553 - -
Vvi14g0714 1271 SMART JmjN_1 139 180 IPR003349 -
Vvi14g0714 1271 Pfam F/Y rich C-terminus 1096 1182 IPR003889 GO:0005634
Vvi14g0714 1271 ProSiteProfiles JmjC domain profile. 360 526 IPR003347 -
Vvi14g0714 1271 SMART fyrn_3 1048 1092 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0714 Vvi-Chr14 10528766 10541605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0714 1 1269 JUMONJI Transcription Factor Family AT1G08620 54.946 0.0 1254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi14g0714 JmjC 3.2e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0714 - - vvi:100243365 2584.68