Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0707 ATGGTGAGGACTCCTTGTTGTGAGAGTATGGGACTGAAGAAGGGGTCATGGACTCCTGAGGAAGATCAGATCTTAGTTTCTCACATTCAGCGCCATGGCCACGGCAACTGGCGGGCTCTCCCCAAAGAAGCCGGGTTAATGAGATGTGGAAAAAGCTGCAGGCTTCGATGGACGAACTACTTGCGCCCAGATATCAAGCGAGGAAACTTCAGCAAGGAAGAAGAAGAAACCATCATCAAGCTCCATCAACTTCTTGGAAACAGGAGAGTTCTCTTTTTCCAATTTCATTAG 291 0.4811 MVRTPCCESMGLKKGSWTPEEDQILVSHIQRHGHGNWRALPKEAGLMRCGKSCRLRWTNYLRPDIKRGNFSKEEEETIIKLHQLLGNRRVLFFQFH* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0707 96 Gene3D - 13 66 - -
Vvi14g0707 96 SMART sant 13 63 IPR001005 -
Vvi14g0707 96 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi14g0707 96 CDD SANT 16 61 IPR001005 -
Vvi14g0707 96 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi14g0707 96 SUPERFAMILY Homeodomain-like 15 89 IPR009057 -
Vvi14g0707 96 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vvi14g0707 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 88 - -
Vvi14g0707 96 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0707 Vvi-Chr14 10167871 10168451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0707 1 88 MYB Transcription Factor Family AT3G02940 77.273 4.70e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi14g0707 Myb_DNA-binding 5.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0707 K09422 - vvi:100251790 192.586