Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0703 ATGCAAATTAGGCTTCCTACAGCAGTTGAAGTCAACAAGGTTGACACAATCAGTGAATTCCTAGAAAGAATTGGACAACCTGACTGTGGGTACTATTTGAAGACAAGAACATGCAAATATGGATCTATATGTAAATATCATCACTCACGGGACAGGCTTGATGCTGGACCAGTCTCATTGAACATTGTAGGTCTATCCATGCGTCAGGAAGAAAAACCATGTTCTTACTACATGCGAACTGGGTTGTGTAAGTTTGGAGTTGCGTGCAAGTTTCATCATCTCCAGCCTGCATCAATTGGAACTGTTTTGCCTGTAACTGGCTCTGTTGCCTTTGGATCTACAGGCATATCAATTACACCTTCATCAGGGTTATCGTATGTGGGTGGTATTCCAGCATGGTTATTACCACGAGCACCATATATGCCTGGCCCACGTATGCAAGGTCCACAAACCTACATGCCTATTGTCCTTTCTCCTTCTCAAGGCATTATACCTGCACAAGGTTGGAACACTTACATGGGAAACATGAGTCCCATATCTTCAACTAGTATTCTGGGATCCAATCTTGTCTACAACACCAAGAATCCGAGTGAGTCAAGTTCCAATGGGCAGGTGCATTTGTTGTCATTGTCGATTCCACATTTACCTGAGAGGCGAGATCAACCAGAATGCTAG 675 0.4356 MQIRLPTAVEVNKVDTISEFLERIGQPDCGYYLKTRTCKYGSICKYHHSRDRLDAGPVSLNIVGLSMRQEEKPCSYYMRTGLCKFGVACKFHHLQPASIGTVLPVTGSVAFGSTGISITPSSGLSYVGGIPAWLLPRAPYMPGPRMQGPQTYMPIVLSPSQGIIPAQGWNTYMGNMSPISSTSILGSNLVYNTKNPSESSSNGQVHLLSLSIPHLPERRDQPEC* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0703 224 SUPERFAMILY CCCH zinc finger 68 95 IPR036855 GO:0046872
Vvi14g0703 224 ProSiteProfiles Zinc finger C3H1-type profile. 23 51 IPR000571 GO:0046872
Vvi14g0703 224 SMART c3hfinal6 70 95 IPR000571 GO:0046872
Vvi14g0703 224 SMART c3hfinal6 23 50 IPR000571 GO:0046872
Vvi14g0703 224 ProSiteProfiles Zinc finger C3H1-type profile. 68 96 IPR000571 GO:0046872
Vvi14g0703 224 Gene3D - 22 103 - -
Vvi14g0703 224 SUPERFAMILY CCCH zinc finger 28 54 IPR036855 GO:0046872
Vvi14g0703 224 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 71 95 IPR000571 GO:0046872
Vvi14g0703 224 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 26 50 IPR000571 GO:0046872
Vvi14g0703 224 PANTHER PROTEIN PHOSPHATASE RELATED 13 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0703 Vvi-Chr14 9898960 9899747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0703 20 93 C2H2 Transcription Factor Family AT2G32930 41.333 1.18e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi14g0703 zf-CCCH 4.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0703 - - vvi:100246519 362.844