Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0702 ATGGACCCTTCAGTTCTCGACGACATAATCAATCGGCTTCGCGAAGTTCGTCTTCGACCCGGGAAGCAGGTGCAGTTATCGGAGTCAGAGATCCGGCAACTCTGTGTAGTTTCTAGGGAGATTTTCTTAAAACAGCCCAATTTGTTGGAGCTATGTGCACCCATCAAGATTTGCGGTGATATACATGGTCAATATTCGGATCTTTTAAGGCTTTTCGACTATGGTGGATTCCCTCCTCAAGCCAATTACTTATTTTTGGGGGATTACGTAGATCGCGGCAAGCAAAGCCTAGAGACTATATGTCTTCTCCTTGCATATAAAATAAGATATCCTGAAAACTTCTTCCTCTTGAGAGGAAACCATGAATGTGCATCTATAAACCGTATATACGGATTTTATGATGAGTGTAAGAGAAGATTTAATGTCAGGTTGTGGAAGATCTTCACTGATTGTTTTAATTGTCTGCCAGTGGCAGCCCGGATTGATGATAAAATTCTCTGCATGCATGGGGGACTTTCCCCTGATTTGCATAATTTGGATCAGATTAGAAATTTACAACGCCCAACTGATGTACCAGACACAGGATTGCTCTGTGATCTTCTCTGGTCAGATCCCAGTAACGATATTCAAGGTTGGGGAATGAATGACAGGGGAGTTTCTTATACATTCGGCCCTGACAAAGTGACAGAGTTTCTTGAGAAGCATGATCTGGACCTTGTTTGTCGTGCTCATCAGGTTGTAGAGGATGGTTATGAATTCTTTGCAAACCGGCAACTTGTAACCATATTTTCGGCGCCTAATTATTGTGGGGAGTTTGATAATGCTGGTGCCATGATGAGTGTGGACGACACTCTAATGTGCTCTTTCCAAATATTAAAACCTGCAGTTAAGAAGTTAAAGTTCAGCTTTGGAAGCACTACTACCACTAAGCCTGGAAATTCTCCAGAAGTCTTTGGGAGCACAACTACAACTAAGCCAGGAAACACTCCAACTGGAGTCAAGGTAAACACAACCTTTTGGTTAAAAGACATCAGCTGA 1038 0.4249 MDPSVLDDIINRLREVRLRPGKQVQLSESEIRQLCVVSREIFLKQPNLLELCAPIKICGDIHGQYSDLLRLFDYGGFPPQANYLFLGDYVDRGKQSLETICLLLAYKIRYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAARIDDKILCMHGGLSPDLHNLDQIRNLQRPTDVPDTGLLCDLLWSDPSNDIQGWGMNDRGVSYTFGPDKVTEFLEKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPAVKKLKFSFGSTTTTKPGNSPEVFGSTTTTKPGNTPTGVKVNTTFWLKDIS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0702 345 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vvi14g0702 345 Gene3D - 2 305 IPR029052 -
Vvi14g0702 345 MobiDBLite consensus disorder prediction 308 331 - -
Vvi14g0702 345 SUPERFAMILY Metallo-dependent phosphatases 21 295 IPR029052 -
Vvi14g0702 345 CDD MPP_PP1_PPKL 5 294 - -
Vvi14g0702 345 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vvi14g0702 345 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vvi14g0702 345 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vvi14g0702 345 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vvi14g0702 345 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vvi14g0702 345 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vvi14g0702 345 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vvi14g0702 345 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 19 296 - -
Vvi14g0702 345 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vvi14g0702 345 FunFam Serine/threonine-protein phosphatase 51 305 - -
Vvi14g0702 345 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vvi14g0702 345 SMART pp2a_7 26 296 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0702 Vvi-Chr14 9882241 9896352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0702 33 240 Calmodulin-binding Proteins AT5G63870 31.855 3.40e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0702 K06269 - vvi:100258649 692.575