Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0661 ATGGCTGATTCTTCATTCTTCCACAACTCTAACTCCCAGTTCTCCCCGGAGTCTTCTCTCGGTTCACCGGACTTTTTCTCTTTTCATGACCCTCTACCCTTTGATCAGAACGACTCCGAAGAGATGCTGCTCTACGGGGTTCTTTCAGAGGCGGTGGCCGACGACTCCTATATGAAAGAAGAAGTGTGCTCTAAGGTTAAGGCCATTGAGGAAGAGCCCATGAAGGAGGTGTCCTATCGAGGAGTTCGGAAGCGGCCATGGGGGAAGTATGCGGCGGAGATAAGAGATTCCACGAGGAATGGCGTGAGGGTTTGGTTGGGAACTTTCGATACTGCTGAGGCTGCAGCTCTGGCTTATGACCAAGCTGCATTTGCGATGAGGGGTTCACTGGCTGTTCTCAATTTTCCAGCAGATATGGTCTACGAGTCGCTCCGGGAGATGAAATATGGGTTCCAGGAGGGGTGTTCACCAGTCCTGGCTTTAAAGAAGAGACACTCCATCAAGAACAAGTCAAGAAAGAGGAAAGAGAAGGAGTTGAGGCTTGAAAATGTGGTGGAGTTTGAGGACTTGGGGACAGATTACTTGGAGGAGCTTCTGAGCATATCTGAGAGTACTAATCCATGGTGA 627 0.4976 MADSSFFHNSNSQFSPESSLGSPDFFSFHDPLPFDQNDSEEMLLYGVLSEAVADDSYMKEEVCSKVKAIEEEPMKEVSYRGVRKRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAAFAMRGSLAVLNFPADMVYESLREMKYGFQEGCSPVLALKKRHSIKNKSRKRKEKELRLENVVEFEDLGTDYLEELLSISESTNPW* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0661 208 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Vvi14g0661 208 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Vvi14g0661 208 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Vvi14g0661 208 PANTHER DNA-BINDING DOMAIN 56 200 IPR044808 GO:0003700|GO:0009873
Vvi14g0661 208 FunFam Ethylene-responsive transcription factor 2 77 137 - -
Vvi14g0661 208 CDD AP2 79 138 IPR001471 GO:0003700|GO:0006355
Vvi14g0661 208 Pfam AP2 domain 79 128 IPR001471 GO:0003700|GO:0006355
Vvi14g0661 208 SUPERFAMILY DNA-binding domain 79 138 IPR016177 GO:0003677
Vvi14g0661 208 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Vvi14g0661 208 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0661 Vvi-Chr14 9102878 9103504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0661 12 208 AP2-EREBP Transcription Factor Family AT3G23240 52.153 5.33e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi14g0661 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0661 K14516 - vvi:104877303 395.971