Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0660 ATGGACTCGTTTGAGGACGGTGGTTGGGATCTTCTTGACTACTGTATCATTGAAGATGCTACTTCAGCTGATTACTTTTGGGCCAATCAGAGTCCTTCTAGGGAAATCAATGCTTTGGTTGTTGACACGGTTTCCACAGAAAAGAGATGCAAAAGGGGAAGGGAAAAGGGTGAACGTTGTAGCAGAGCAGAATCTAAAGCATGTCGTGAGAAAATGCGGAGGGAGAAAATGAATGACAGGTTCTTGGACCTCAGCTCTCTTTTGGAACCTGGGAGGCCTCCCAAAACTGATAAATCTTCTATCCTCAGTGATGCAATTCATGTTCTGAACCAGCTCAGAACTGAAGCTCGGGAGCTTAAAGGAAAAACTCAAAAGCTTCGTGAAGACATTAGAACTTTGAAGGCAGAGAAGAGTGAACTCCGTGAAGAGAAACTTATCCTGAAGGCAGATAAGGAGAAGATGCAACAGCGGGTGAAAGCCATGAATGTTGTACCTCCTGGATATGTGCCTGCCCATCCATTAGCATATCAAGCTGGAGCAAACAAGATGGTGGGCTTTCCCGGTTACGGTGGGTTCCAGATGTGGCAATGGATTCCCCAAACTGTGCTTGATACATCCCAAGATCATGTGCTCAGACCTCCTGTAGCTTAG 651 0.4593 MDSFEDGGWDLLDYCIIEDATSADYFWANQSPSREINALVVDTVSTEKRCKRGREKGERCSRAESKACREKMRREKMNDRFLDLSSLLEPGRPPKTDKSSILSDAIHVLNQLRTEARELKGKTQKLREDIRTLKAEKSELREEKLILKADKEKMQQRVKAMNVVPPGYVPAHPLAYQAGANKMVGFPGYGGFQMWQWIPQTVLDTSQDHVLRPPVA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0660 216 Coils Coil 102 157 - -
Vvi14g0660 216 SMART finulus 67 118 IPR011598 GO:0046983
Vvi14g0660 216 Gene3D - 61 145 IPR036638 GO:0046983
Vvi14g0660 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 130 IPR036638 GO:0046983
Vvi14g0660 216 PANTHER BHLH TRANSCRIPTION FACTOR 8 216 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vvi14g0660 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Vvi14g0660 216 CDD bHLH_AtILR3_like 66 141 - -
Vvi14g0660 216 Pfam Helix-loop-helix DNA-binding domain 64 112 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0660 Vvi-Chr14 9066856 9069606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0660 50 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 57.143 1.57e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g0660 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0660 - - vvi:100251326 431.795