Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0652 ATGTTAAAAGCATTAGCTCCTGGATTATTGCTTACTACTTTAATCCTCTCTGTCACCGCCAGTGATAATGGGTTTGCCAATTGCAATTGTGATGATGAGGGGTTTTGGAGCATACATAACATTTTAGAGTGCCAAAAAGTGAGCGATCTCTTGATTGCAGTAGCCTATTTTTCAATCCCCATTGAGCTTCTTTACTTTATTAGCTGCTCCAATGTGCCATTTAAATGGGTCCTCCTTCAGTTCATTGCATTCATAGTCCTATGTGGGCTGACCCATTTGCTCAATGTGTGGACTTACTATGGTCCTCACTCATTCCAGTTGATGCTGGCCCTCACGATTTCTAAATTCCTCACTGCTCTAGTGTCATGTGCCACTGTAATAACCCTTTTGACTCTGATCCCTCTTCTTCTCAAAGTGAAAGTAAGAGAGCTCTTTTTGAAGCAAAATGTATTGGAATTGGACCAAGAGGTTGGGATGATGAAGAAACAGAAGGAAGCAAGCTGGCATGTGCGAATGTTGACCCATGAAATTAGGAAGTCACTTGATAAGCACACCATTTTGTACACCACTCTGGTTGAGCTTTCAAAGACTTTGGACCTGCACAACTGTGCGGTTTGGATGCCGAATGAAAATAGAACAATGATGAACCTGACCCATGAGTTGAAAGTGAGGAATTCCTTAAATCGTAGTCTCTCTATATCAGTTAATGACCCAGATGTATCGGAAATAAAAGCGAGCAAGGGAGTGAGGATTTTGAGGCCAGATTCAGCACTTGGGGCTGCTAGCAGTGGTGAGTCTGATGACTCAGGCGCTATAGCAGCAATTCGAATGCCAATGCTTCGGGTTTCAAATTTCAAAGGAGGAACACCAGAGTTGGTAGAAACCTGTTATGCCATTCTGGTTTTGGTTCTTCCATTTGTGAATTCTAGAACTTGGACCTATCAAGAATTGGAGATTGTGGAAGTGGTTGCTGATCAGGTGGCTGTGGCTCTGTCTCATGCTGCAGTTCTTGAAGAGTCTCAGCTAACCAGGGAGAAACTGGGAGAGCAAAATCGTGCACTGCAGCAAGCTAAGGAGAATGCAATGATGGCAAGCCAGGCAAGGAACTCATTTCAGAAGGTGATGAGTCATGGGCTGAGGAGGCCAATGCACTCAATTTTGGGCCTGCTTTCTATGTTTCAAGATGAGACTATGAGTTTCAAACAGAAAATTGTAATTGATACAATTATGAAAACCAGCAATGTACTATCAACTTTAATCAATGATGTGATGGAAATTTCAGCAAAAGATAATGGAAGGTTCCCACTGGAGATGAGGCCTTTTCGGCTACATTCCATGATTAAGGAAGCCTCTTGCCTTGCCAAGTGCTTGTGTGTATATAAAGGCTTTGGTTTTGCAGTTGATATTCGGAACCCTTTGCCTGATCAGGTGATTGGTGATGAGAAAAGGACTTTCCAAGTAGTTTTGCATATGGTTGGGTATCTGTTGAATATCTTTGATGGAAGTGGTTCTTTTATTTTCCGGGTTTCCTCAGAGAGTGGAAGTGATGGAAAGAATGATAAAACATGGGGAATTTGGAGACCAGATGAGTATGCATGTATAAAATTTGAAATTGAAATTAGTGATGGAGGTTCTCTGTCATATGGCTTGAGCACAGCTGTAGAATTTGCTGGTAGGAAGCACAATAGTGGTGAAAATAAGGAGGGTCTGAGCTTCAGCATGTGCAAAAAGCTTGTGCAGATGATGCAAGGCAATATCTGGATATCCTCCAACCCTCAAGGTCTTGCACAAAGCATGACACTTGTTCTCAAGTTTCAACTCCAGCCATCTTTTGGGAGATCCATTTTTGGACTTGGAAATTCCTCAGAACAACCAAATTCCAATTCTATGTTCAGAGGACTTCGAGTTATACTGGCTGATGATGATAATGTAAACAGGACTGTGACCAAGAAGCTGCTTGAGAGGCTGGGTTGCCAAGTATCTGCTGTGTCATCTGGGTTTGAATGCTTGAGTGTTCTTAGCCCTTCTGAAGCTCCTTTCCAAATCATTCTTTTGGATCTTCAGATGCCTGAAATGGATGGATTTGAAGTAGCAAAAAGAATCCGAAAGTTCCGCAGCCGCAGTTGGCCTTTGATCATAGCCCTGACAGCAAGCGCTGATGAGCATTTGTGGGAGAGATGCATCCAGGTGGGAATGAATGGCATTATTAGAAAGCCTGTTCTTTTACAAGGAATGGCAGATGAACTTAGAAGAGTCTTGAAGCGAGCCAACGATGGGGTGTGA 2283 0.4275 MLKALAPGLLLTTLILSVTASDNGFANCNCDDEGFWSIHNILECQKVSDLLIAVAYFSIPIELLYFISCSNVPFKWVLLQFIAFIVLCGLTHLLNVWTYYGPHSFQLMLALTISKFLTALVSCATVITLLTLIPLLLKVKVRELFLKQNVLELDQEVGMMKKQKEASWHVRMLTHEIRKSLDKHTILYTTLVELSKTLDLHNCAVWMPNENRTMMNLTHELKVRNSLNRSLSISVNDPDVSEIKASKGVRILRPDSALGAASSGESDDSGAIAAIRMPMLRVSNFKGGTPELVETCYAILVLVLPFVNSRTWTYQELEIVEVVADQVAVALSHAAVLEESQLTREKLGEQNRALQQAKENAMMASQARNSFQKVMSHGLRRPMHSILGLLSMFQDETMSFKQKIVIDTIMKTSNVLSTLINDVMEISAKDNGRFPLEMRPFRLHSMIKEASCLAKCLCVYKGFGFAVDIRNPLPDQVIGDEKRTFQVVLHMVGYLLNIFDGSGSFIFRVSSESGSDGKNDKTWGIWRPDEYACIKFEIEISDGGSLSYGLSTAVEFAGRKHNSGENKEGLSFSMCKKLVQMMQGNIWISSNPQGLAQSMTLVLKFQLQPSFGRSIFGLGNSSEQPNSNSMFRGLRVILADDDNVNRTVTKKLLERLGCQVSAVSSGFECLSVLSPSEAPFQIILLDLQMPEMDGFEVAKRIRKFRSRSWPLIIALTASADEHLWERCIQVGMNGIIRKPVLLQGMADELRRVLKRANDGV* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0652 760 Gene3D - 333 430 - -
Vvi14g0652 760 Gene3D - 431 608 IPR036890 -
Vvi14g0652 760 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vvi14g0652 760 SMART gaf_1 182 341 IPR003018 GO:0005515
Vvi14g0652 760 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 433 IPR036097 GO:0000155|GO:0007165
Vvi14g0652 760 Coils Coil 337 364 - -
Vvi14g0652 760 Pfam GAF domain 184 331 IPR003018 GO:0005515
Vvi14g0652 760 Gene3D - 634 758 - -
Vvi14g0652 760 SMART REC_2 634 753 IPR001789 GO:0000160
Vvi14g0652 760 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Vvi14g0652 760 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 604 IPR003594 -
Vvi14g0652 760 SUPERFAMILY CheY-like 631 756 IPR011006 -
Vvi14g0652 760 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Vvi14g0652 760 FunFam Ethylene receptor 632 756 - -
Vvi14g0652 760 Pfam His Kinase A (phospho-acceptor) domain 368 432 IPR003661 GO:0000155|GO:0007165
Vvi14g0652 760 Gene3D - 160 332 IPR029016 -
Vvi14g0652 760 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 757 - -
Vvi14g0652 760 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Vvi14g0652 760 FunFam Ethylene receptor 4 334 428 - -
Vvi14g0652 760 SUPERFAMILY GAF domain-like 185 334 - -
Vvi14g0652 760 CDD REC_ETR-like 634 749 - -
Vvi14g0652 760 CDD HATPase_ETR2_ERS2-EIN4-like 473 603 - -
Vvi14g0652 760 ProSiteProfiles Histidine kinase domain profile. 374 605 IPR005467 -
Vvi14g0652 760 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 421 594 IPR036890 -
Vvi14g0652 760 Pfam Response regulator receiver domain 636 743 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0652 Vvi-Chr14 8893241 8896884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0652 20 758 Miscellaneous Gene Families AT3G04580 65.033 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi14g0652 GAF 6.6e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0652 K14509 - vvi:100249603 1461.82