Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0646 ATGATGAACATGGAGGGGGTTGAAGAAGCTAACAAATCAGCTGTTGAGAGCTGTCATAGAGTTCTTAGTTTCTTATGCCAACCTCAAGATCAGGTTCAGTATAGAAACTTAATGATGGAGACAGAAGAGGCTGTGTTCAAGTTCAAGAGGGTTGTGTCTCTTCTCAACAATGGCTTTGGCCATGAAAGAGTGAGAAAGTTCAGGAGATTAAGATCATCTTTGCCTCAGAGCATCTTTCTAGAAACCCCTAATTACAAACCGAATCCTTCACCAAAGCCTCTCCAATTACTCCCAACTAATTTCCTTGAAAACCCACTTCCAGAAATAGATTCAAAAGCCAAAAGTTCTCTGCAAATCACCCCAAAAATATTTCTTGAGAGTCAGGCATCAGATATTGTTTCATCAGTCAAGCCTCCTTTGCAAATTGTTCAACAAAAACCATCACAGCACTATCAGTTCCTTCAACAACAGCATCATCATCATCATCATCAGCAGCAGCAGCAGCAGATACAGAGGATACAGTTTCAGAAGCAACAGATGAAGTATCAAGCTGACATGATGTACTCTAGGAGTAACAGTGGAATAAACCTTAAGTTTGATGGCTCTAGTTGCACTCCCACGATGTCATCCACTAGATCATTTATATCTTCTCTTAGCATGGATGGTAGTGTTGCTAACTTGGACGGAAATTCCTTCCATTTGATCGGTGTTCCTCAGCTTTCTGATCCAAATTCTCACCAACCCAGAAGGAGATGCAGTGGTAGGGGAGAAGATGGGAGCGTCAAATGTGGTAGCAGTGGTAAATGCCATTGTTCAAAGAGGAGGAAACTGAGGGTGAAGAGATCTATTAAAGTGCCTGCCATCAGTAACAAGGTTGCAGATATTCCTCCTGATGAGTATTCATGGAGGAAGTATGGGCAGAAGCCAATTAAGGGTTCACCACATCCTAGGGGGTACTATAAATGTAGCAGCATGAGAGGTTGCCCAGCAAGGAAGCATGTTGAGAGATGTTTGGAAGACCCTTCAATGCTTATTGTCACTTACGAAGGTGAGCATAACCATTCCAGGTTGCTGTCTTCACAATCTGCCCACACATAA 1098 0.4253 MMNMEGVEEANKSAVESCHRVLSFLCQPQDQVQYRNLMMETEEAVFKFKRVVSLLNNGFGHERVRKFRRLRSSLPQSIFLETPNYKPNPSPKPLQLLPTNFLENPLPEIDSKAKSSLQITPKIFLESQASDIVSSVKPPLQIVQQKPSQHYQFLQQQHHHHHHQQQQQQIQRIQFQKQQMKYQADMMYSRSNSGINLKFDGSSCTPTMSSTRSFISSLSMDGSVANLDGNSFHLIGVPQLSDPNSHQPRRRCSGRGEDGSVKCGSSGKCHCSKRRKLRVKRSIKVPAISNKVADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHSRLLSSQSAHT* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0646 365 SMART WRKY_cls 296 356 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g0646 365 ProSiteProfiles WRKY domain profile. 291 357 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g0646 365 Pfam WRKY DNA -binding domain 298 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g0646 365 MobiDBLite consensus disorder prediction 238 258 - -
Vvi14g0646 365 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 5 362 IPR044810 GO:0003700
Vvi14g0646 365 Gene3D WRKY domain 283 356 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g0646 365 SUPERFAMILY WRKY DNA-binding domain 294 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g0646 365 Pfam Plant zinc cluster domain 249 294 IPR018872 -
Vvi14g0646 365 FunFam WRKY transcription factor 65 280 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0646 Vvi-Chr14 8753840 8755746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0646 4 365 WRKY Transcription Factor Family AT5G28650 55.497 8.06e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi14g0646 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0646 - - vvi:100254726 687.567