Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0642 ATGGCAGTCGAAACTCTACACCTCGCCAAGGAGGGCTTCACAGCCGCCGACGAGGACGACCAGCTGCCGTCTCCTTCGCCCGCAAAGGAGGCGCATTTTAGAGGTGTACGCAAGCGTCCCTGGGGCCGATTTGCAGCGGAGATTAGAGATCCATGGAAGAAGACGAGGAAGTGGCTAGGCACCTTCGACACCGCCGAGGAAGCCGCTAGAGCCTACGACGACGCTGCCAGGAGTCTCCGGGGACCCAAGGCCAAGACGAATTTCTCCCCCGTACGTTCGCTGCCGGTGGTTTCTGGCTTCGGAGACCGAGTGAACCGGTGGCGCGCGGCTTACGTGGCTCCGGACGGACGGACAGTGTGCTTTCCCGGCACTGCAGGAGGTCCGGCGGAGATTGCTGCGGGGTTTTCGGGGTATAAATACGACGCAGTTGCGGTGTTGGTGCGGAGTGAGGTGGAGGAGAAGAAGAAGAAGAAGCCGCTGCCGTTCGATCTGAATCTCCCGCCATCCCTGTTATGA 516 0.6085 MAVETLHLAKEGFTAADEDDQLPSPSPAKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARSLRGPKAKTNFSPVRSLPVVSGFGDRVNRWRAAYVAPDGRTVCFPGTAGGPAEIAAGFSGYKYDAVAVLVRSEVEEKKKKKPLPFDLNLPPSLL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0642 171 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Vvi14g0642 171 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Vvi14g0642 171 MobiDBLite consensus disorder prediction 152 171 - -
Vvi14g0642 171 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Vvi14g0642 171 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 108 - -
Vvi14g0642 171 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Vvi14g0642 171 MobiDBLite consensus disorder prediction 10 35 - -
Vvi14g0642 171 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Vvi14g0642 171 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Vvi14g0642 171 SMART rav1_2 32 96 IPR001471 GO:0003700|GO:0006355
Vvi14g0642 171 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Vvi14g0642 171 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0642 Vvi-Chr14 8660502 8661017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0642 28 88 AP2-EREBP Transcription Factor Family AT1G50640 86.885 2.18e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi14g0642 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0642 K09286 - vvi:104881465 325.479