Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0640 ATGGCATCTGCTGAAATTGCGGTTTCTGCCGTCGAAGTGGTTGTGGATCCGCCGGTGACGGAGCCGCCGGTGGAGAACCAGACTGGTAGAAAATCGAAGGCCAAGAAAGCCAAAGCTCCTAAAGAGCCAAAAGCCAAGAAGCCGGCAGCTAAAAAGCCGAAATCTCCTTCAACTCACCCTCCTTTCCTTGAGATGATTACTGAAGCAATTGTAGCTTTGAAGGAGAGGACTGGTTCCAGTCAGTATGCGATAACCAAGTTCATTGAAGAGAAGCACAAGAAGTTGCCTTCGAATTTCAGGAAGCTTTTGCTCGTGCATTTGAAGAAGCTCGTGGCTTCTGAAAAGCTCGTGAAGGTGAAGAACTCGTACAAACTTCCGAGTTCTCGATCGGCCCCATCGAAGGCAGCTAAGAAGCCCGCCGCAGCAAAACCGAAGCCAACAAAGCCTGCGAAAGCACCAGCGAAGCCGAAAGCTGCAGCTAAGCCGAAGCCTAAGGCTACCACCAAACCGAAGGCTGCTGCCAAGTCGAAAGCAGCTCCTGTCAAGCCGAAAGCAGCTCCTGCCAAGCCGAAGGCTGCTGTGAAGCCAAAGGCGGTTCCTCGAAAAGCCCCTGCTGCGCCCAAAGCTGTCGCTGCTAAGCCAAAACCTAAGCCTAAGGCCAAACCGGCAGTGAAGCCGAAGTCGAAGCCGGCTGCAAGACCTGCTAAGGCTGCCAGGACGTCTACAAGGACAACTCCGGGAAAGAAAGCACCGACGCCATCGAAGGCTAAGCCAGCTGCTCCAGCAGCAAAGGTGAAGAAGACTCCTGCCAAGAAGCCGAAAAGCATGAAGTCTCCGGCCAAGAAAGGTCCGGCAAGAAAGGCGAAAAAGTGA 873 0.5338 MASAEIAVSAVEVVVDPPVTEPPVENQTGRKSKAKKAKAPKEPKAKKPAAKKPKSPSTHPPFLEMITEAIVALKERTGSSQYAITKFIEEKHKKLPSNFRKLLLVHLKKLVASEKLVKVKNSYKLPSSRSAPSKAAKKPAAAKPKPTKPAKAPAKPKAAAKPKPKATTKPKAAAKSKAAPVKPKAAPAKPKAAVKPKAVPRKAPAAPKAVAAKPKPKPKAKPAVKPKSKPAARPAKAARTSTRTTPGKKAPTPSKAKPAAPAAKVKKTPAKKPKSMKSPAKKGPARKAKK* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0640 290 Pfam linker histone H1 and H5 family 59 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi14g0640 290 MobiDBLite consensus disorder prediction 17 63 - -
Vvi14g0640 290 FunFam Histone H1 53 138 - -
Vvi14g0640 290 CDD H15 58 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi14g0640 290 PANTHER HISTONE H1 31 287 - -
Vvi14g0640 290 SUPERFAMILY "Winged helix" DNA-binding domain 55 139 IPR036390 -
Vvi14g0640 290 MobiDBLite consensus disorder prediction 116 290 - -
Vvi14g0640 290 MobiDBLite consensus disorder prediction 267 290 - -
Vvi14g0640 290 Gene3D - 54 142 IPR036388 -
Vvi14g0640 290 MobiDBLite consensus disorder prediction 33 53 - -
Vvi14g0640 290 PRINTS Histone H5 signature 45 66 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi14g0640 290 PRINTS Histone H5 signature 72 89 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi14g0640 290 PRINTS Histone H5 signature 151 165 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi14g0640 290 PRINTS Histone H5 signature 182 199 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi14g0640 290 PRINTS Histone H5 signature 204 223 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi14g0640 290 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 58 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi14g0640 290 SMART h15plus2 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0640 Vvi-Chr14 8586657 8587615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0640 60 127 Single Myb Histone (SMH) Gene Family AT1G72740 41.176 3.40e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0640 K11275 - vvi:100259836 163.31