Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0612 ATGCATACACGTATCACCTATCTTCTATACCCCCATGCATATCATCACATTTCTCTTTCTAAACTTATTCATCCCCATTCCATTAAGCCTCCCAAGGGTGTTCTTCTCTATGGACCTCCTGGAATAGGCAAGACACTATTAGCCAGAGCAATTGCGAGCAACATAGATGCCAACTTCTTGAAGGTTGTCTCAAGTGCCATTATTGATAAATATATTGGTGAAAGAGCGAGATTGATGAGGGAAATGTTTGGATATGCACGAGATCACCAACCCTATATCATTTTTATGGATGAGATTGATGCCATTGGTAAGCGTCGTTTCAGCGAGGGAATTTGTGTCAAAATGATTATGGTATATCAGGCTCGACTAATGGGCCATCAATTTGATCAGTTTTCGGCTCATTCAGAACAAGTAGCACCATCCCTGGGTGGATGGGAGGAGCAAAACAGTCAGCTGAATTCAACATCCCAACACCAGCCCATGGACACTGATAGGCCTGCCGATTCACATGTTGCGAATAGGGACTTGCCTCCTGAAAGCAAATCAGGGGAAACTACAGAAATGGAAGTCCTTGTAAATGGTCGGGATGTGGATTCATTACCTGAGAACAATTCGAAGGAAAAAAAAAGATATGAATGGCGATAG 645 0.4279 MHTRITYLLYPHAYHHISLSKLIHPHSIKPPKGVLLYGPPGIGKTLLARAIASNIDANFLKVVSSAIIDKYIGERARLMREMFGYARDHQPYIIFMDEIDAIGKRRFSEGICVKMIMVYQARLMGHQFDQFSAHSEQVAPSLGGWEEQNSQLNSTSQHQPMDTDRPADSHVANRDLPPESKSGETTEMEVLVNGRDVDSLPENNSKEKKRYEWR* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0612 214 Gene3D - 27 110 IPR027417 -
Vvi14g0612 214 MobiDBLite consensus disorder prediction 200 214 - -
Vvi14g0612 214 MobiDBLite consensus disorder prediction 146 214 - -
Vvi14g0612 214 Pfam ATPase family associated with various cellular activities (AAA) 34 106 IPR003959 GO:0005524|GO:0016887
Vvi14g0612 214 MobiDBLite consensus disorder prediction 146 162 - -
Vvi14g0612 214 SMART AAA_5 30 177 IPR003593 GO:0016887
Vvi14g0612 214 MobiDBLite consensus disorder prediction 163 182 - -
Vvi14g0612 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 106 IPR027417 -
Vvi14g0612 214 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 24 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0612 Vvi-Chr14 7867261 7868513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0612 29 109 Calmodulin-binding Proteins AT3G56690 45.679 3.69e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0612 K03064 K12874 vvi:100260373 163.31