Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0598 ATGACGAGTCAGGTGGTGAAGGTACGGCGGGAGACAATAGCAGCATGCATGACATGCCCTCTTTGTAATAAGCTTTTGAAGGAAGCTACGACAATATCTCTATGTCTTCATACGTTTTGCAGGAAATGCATATATGAGAAGCTCTCAGATGAAGAGGTAGATTGCTGTCCTGTATGCAATATTGATTTGGGCTGTGTTCCTGTGGATAAACTCAGGCCTGACCACAATTTGCAAGATATAAGGGCCAAAATTTTTCCTTTCAAAAGAAGAAAGACCAGTGTTCCTGAAGTTATGCCTCCAATTCCACTGCCAGTTAAAAGGAAGGAAAGATCACTTTCATCTTTGGTCGTAAGCACTCCCCGAGTATCAATGCAGACTGGCTTGACCGGAAGGAGAACAAAAGCTGTTGCGAGAAAGAGTACTGCTCTACGAGGTTCCAGTTTTTCCATTGTGGAACCCATTAAGAAAGAGGAAGATTCTGTGGAAGATTGTCCAGAAAGCTCAAGCTCACCTGAGTCTCGAAACAAAGTTGCTCAAACTAAGAAGCAGAATTCTTCCATATCTGAAGCTTCAAAAGATCAAAAGCCTAATAAAGATACTGAGAATGATGCTGATCCATGGGATGGAAAAGTTGATCTGTGGACACCCTTAAACTGTCTTGTTGAAGCTGCAAACAGAACCAAGTCCTCTAAATTTAATTCTCAAGGGACGTCTCTTGCTAAGTCGGAACCATTTAATGCTCCTGACAGTGAAGTATATATGCCTAAAACTAAAGCTAAAGCAGAGCCACTGAATGCTGCTGATGGTGAAGTCTGCATTCCTAAGACCAAAATCAAGGAGCATGGACACAAAATAAAAGTTCAAGATGATAAGAATGGAGCGGCCTTGCTTCCAGGACCAGTGAAACGTAGAAGAATGCGTGCAGTGGGCCGAAAAAGAATATCTGCATCAGGGGAAATGTGCACCCCAGCACAAGTTGTGCTAAGTGCTGCAGGGGCCAAACGCGGCAGAAGAAATTGTCCAATTTGGTTCTCATTAGTTGCTTCTGAAAACCAGGGAGGAAATGGTCCCTTGTCAAAGATACCTGCATATTACTTGAGGGTAAAGGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTACCTTGTAAAGAAACTTGATCTGACCAACGAAGCTGAGGTGGAGATAAGGTGCCAGGGTGAAGCAGTGGTTCCGACGCTGCAGCTGCAGAAGTTGGTGGAGCTATGGCTGCGAACAGCATCGACATCAAAAAGAGTGGCAACATCAGTAGGCACCTCAGCCAAGGAATTTGTGATGGTCTTGACATACACAAGGGTCCAAGCCCCTTGA 1350 0.4415 MTSQVVKVRRETIAACMTCPLCNKLLKEATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCVPVDKLRPDHNLQDIRAKIFPFKRRKTSVPEVMPPIPLPVKRKERSLSSLVVSTPRVSMQTGLTGRRTKAVARKSTALRGSSFSIVEPIKKEEDSVEDCPESSSSPESRNKVAQTKKQNSSISEASKDQKPNKDTENDADPWDGKVDLWTPLNCLVEAANRTKSSKFNSQGTSLAKSEPFNAPDSEVYMPKTKAKAEPLNAADGEVCIPKTKIKEHGHKIKVQDDKNGAALLPGPVKRRRMRAVGRKRISASGEMCTPAQVVLSAAGAKRGRRNCPIWFSLVASENQGGNGPLSKIPAYYLRVKDGNLPVSFIQKYLVKKLDLTNEAEVEIRCQGEAVVPTLQLQKLVELWLRTASTSKRVATSVGTSAKEFVMVLTYTRVQAP* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0598 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Vvi14g0598 449 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 446 IPR044807 GO:0004842
Vvi14g0598 449 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vvi14g0598 449 MobiDBLite consensus disorder prediction 166 191 - -
Vvi14g0598 449 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Vvi14g0598 449 MobiDBLite consensus disorder prediction 228 244 - -
Vvi14g0598 449 MobiDBLite consensus disorder prediction 192 208 - -
Vvi14g0598 449 SUPERFAMILY RING/U-box 14 84 - -
Vvi14g0598 449 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vvi14g0598 449 SMART ring_2 19 59 IPR001841 -
Vvi14g0598 449 CDD RING-HC_PCGF 17 60 - -
Vvi14g0598 449 MobiDBLite consensus disorder prediction 228 250 - -
Vvi14g0598 449 MobiDBLite consensus disorder prediction 154 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0598 Vvi-Chr14 7617918 7629126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0598 5 369 C3H Transcription Factor Family AT2G30580 48.641 1.39e-100 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0598 K16277 - vvi:100241529 862.448