Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0593 ATGGCTAGCATTGTGTGTGCTGAGCGCGATAAATTTAACCTCAATTATGAAGAGACTGAGCTGCGTTTAGGCTTAGGCTTGCCTGGCGGAGGTGGAAACGATGGCGATGTCTCCAAGACTAGCGGGAAGAGAGGGTTCTCAGAAACTGTTGATTTGAAGCTTAATCTTTTGTCTAAAGATTCTGTGGCAGATCAAGCCGAGAAGATGAAGGAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTGACAGTGCAAAAGAACAGCAGTGAGGAGGAGAAGGCTAGCAGCAGTGCAGCATTTGTGAAGGTTAGCATGGATGGTGCACCATACCTACGTAAGGTGGACTTAAAGATGTACAAGAGCTATCAAGAACTCTCTGATGCCCTAGGCAAAATGTTCAGCTCCTTTACTATTGGCAACTGTGGATCACAAGGAATGAAGGATTTCATGAATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTGCCCCAAGAGCAGTGGAGAAGTGCAAGAACAGAAGCTAG 717 0.4784 MASIVCAERDKFNLNYEETELRLGLGLPGGGGNDGDVSKTSGKRGFSETVDLKLNLLSKDSVADQAEKMKEKSALPPSNDPAKPPAKAQVVGWPPVRSFRKNILTVQKNSSEEEKASSSAAFVKVSMDGAPYLRKVDLKMYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0593 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 225 IPR003311 GO:0005634|GO:0006355
Vvi14g0593 238 Gene3D - 114 232 - -
Vvi14g0593 238 FunFam Auxin-responsive protein 115 230 - -
Vvi14g0593 238 SUPERFAMILY CAD & PB1 domains 115 219 - -
Vvi14g0593 238 MobiDBLite consensus disorder prediction 65 90 - -
Vvi14g0593 238 ProSiteProfiles PB1 domain profile. 120 220 IPR000270 GO:0005515
Vvi14g0593 238 MobiDBLite consensus disorder prediction 24 44 - -
Vvi14g0593 238 Pfam AUX/IAA family 39 229 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0593 Vvi-Chr14 7563482 7565233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0593 111 223 B3 DNA Binding Superfamily AT3G61830 33.628 6.70e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi14g0593 AUX_IAA 8.4e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0593 K14484 - vvi:100250231 434.876