Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0592 ATGGAGAACAAGGTCATATACGAGAAAGATCTCAATCTTGAGGCCACAGAGCTTAGATTAGGGTTGCCGGGCACCAAGAAGCCTGAGAAACAGGCGCCTCCTAGTTTGAAGACGAGCAACAAAAGAGCCTTGCCTGACATGAACGAGGAGTCGGGATCTGGGAACAACTCTAGTGTCTCGGATGATGGAAAATCCCACCGTGAAACTGCTCCGGCCCCCAAGGCACAAGTAGTAGGGTGGCCACCGGTTCGATCATACCGGAAAAGCTGTTTCCAGCCGAAGAAAACGGAGGCTGAGGAGGGGAGAACCTATTTGAAAGTGAGCATGGATGGAGCTCCTTATCTCAGAAAGATTGACCTAAAGGTGTACAAAGGCTATCCAGAGCTCCTTAAGGCATTGGAAGAGATGTTCAAGTTCAGTGTTGGCCAGTACTCAGAGAGGGAAGGCTACAATGGTTCAGAATACGCACCTACCTATGAAGACAAAGATGGGGATTGGATGCTGGTGGGAGATGTTCCCTGGAATATGTTCATCTCTTCCTGCAAGAGGCTAAGAATCATGAAAGGATCAGAAGCTAGAGGCTTGGGCTGCTTTCTATAG 600 0.49 MENKVIYEKDLNLEATELRLGLPGTKKPEKQAPPSLKTSNKRALPDMNEESGSGNNSSVSDDGKSHRETAPAPKAQVVGWPPVRSYRKSCFQPKKTEAEEGRTYLKVSMDGAPYLRKIDLKVYKGYPELLKALEEMFKFSVGQYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFISSCKRLRIMKGSEARGLGCFL* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0592 199 Gene3D - 96 198 - -
Vvi14g0592 199 MobiDBLite consensus disorder prediction 32 60 - -
Vvi14g0592 199 MobiDBLite consensus disorder prediction 15 78 - -
Vvi14g0592 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 193 IPR003311 GO:0005634|GO:0006355
Vvi14g0592 199 ProSiteProfiles PB1 domain profile. 102 189 IPR000270 GO:0005515
Vvi14g0592 199 FunFam Auxin-responsive protein 97 199 - -
Vvi14g0592 199 SUPERFAMILY CAD & PB1 domains 96 188 - -
Vvi14g0592 199 Pfam AUX/IAA family 16 196 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0592 Vvi-Chr14 7536603 7537551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0592 102 195 B3 DNA Binding Superfamily AT2G46530 37.234 5.87e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vvi14g0592 AUX_IAA 5.4e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0592 K14484 - vvi:100262403 398.667