LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g0578	ATGGAGCTTCCTTCAAACCTGCAGCCAAATGAAGCAAGCCCCGAGTGGATGAACAGGGCGGACAACGCATGGCAACTCACGGCAGCAACACTTGTAGGCATGCAGAGCATTCCAGGGCTAGTGATCCTCTATGGAAGCATGGTAAAGAAGAAATGGGCAGTGAACTCAGCTTTCATGGCCCTCTACGCCTTCGCAGCAGTAATAATATGCTGGGTAGGGTGGGGCTATCGCATGTCTTTCGGCGAAAAGCTAGTCTTCTTCTTAGGAAAGCCGGGGGTTGCCCTAGACGCCGATCTTCTTCTAGGCCAGGCGTTTTTAGGCATGTTTCCAACCGCTACAATGGTGTTCTTCCAACTTGTGTTTGCAGCCATTACAGTGATTTTGATAGGCGGAGCATTGTTGGGGAGAATGAATTTCGGTGCATGGATGTTGTTTGTGCCACTGTGGCTTACGTTTTCGTACACCATCGGGGCGTATAGCGTATGGTGTCCTGATGGGTGGCTGGCGAAGCTTGGAGTTATCGACTTTGCAGGTGGGTATGTGATTCACCTCTCCTCTGGCGTTGCTGGCTTCACTGCAGCATATTGGGTGGGACCAAGAGCGAGTGGTGACAGGGATAGCTTCCCACCCAATAATATGATTCTGATGCTTGGGGGTGCAGGGCTGCTATGGATGGGGTGGAGTGGTTTCAACGGCGGAGCTCCCGCTGTTGCCAGCTTGGACGCATCTCTGGCCGTCCTCAACACCCACGTCTGCGCTGCTACTAGTCTGATGACGTGGTTAATCCTGGACACCATTTTCTTTGGGAAGCCACGTGTGTTTGGTGCTATACAAGGCATGATCACTGGCTTGGTTTGCATCACGCCTGCAGCTGGAGTAGTCCAAGGTTGGGCAGCCATGCTAATGGGAGTATTCTCAGGAAGCATTCCATGGTACACAATGATGGTGCTCCACAACAAGCTCAAGTTCCTTACACAAGTGGACGACACCATGTCCATCTTCCACTCTCACGCCATTGCGGGAAGCTTAGGCGGCATACTCACCGGCTTCTTCGCCATGCCAAAGCTCTGCCGCCTCTTTTACATGGTACCCGATTGGGAGAAATACATTGGCCTAGCCTACGCTCTTCAAGAAGATCGAACCTCAAAAGGGTTACGACAAATGGGAATTCAACTTGTAGGCATTCTCTTCATTGTGTGCCTCAACATTGTCATGACTAGCTTCATTTGTTTGCTGATTAGAACCCTGGTTCCACTTAGACTAGCTGAGGATGAGTTGCAGATAGGCGACGATGCAGTGCATGGGGAGGAAGGTTATGCCTTGTGGGGTGATGGGGAGATATTTGAGAATTCTAAGAATAATTCAGTTTTTGACATGGAAGAATTTGTGTCTGTGCCCTCAAAGTCTCTGGATGATGTTTAG	1422	0.5035	MELPSNLQPNEASPEWMNRADNAWQLTAATLVGMQSIPGLVILYGSMVKKKWAVNSAFMALYAFAAVIICWVGWGYRMSFGEKLVFFLGKPGVALDADLLLGQAFLGMFPTATMVFFQLVFAAITVILIGGALLGRMNFGAWMLFVPLWLTFSYTIGAYSVWCPDGWLAKLGVIDFAGGYVIHLSSGVAGFTAAYWVGPRASGDRDSFPPNNMILMLGGAGLLWMGWSGFNGGAPAVASLDASLAVLNTHVCAATSLMTWLILDTIFFGKPRVFGAIQGMITGLVCITPAAGVVQGWAAMLMGVFSGSIPWYTMMVLHNKLKFLTQVDDTMSIFHSHAIAGSLGGILTGFFAMPKLCRLFYMVPDWEKYIGLAYALQEDRTSKGLRQMGIQLVGILFIVCLNIVMTSFICLLIRTLVPLRLAEDELQIGDDAVHGEEGYALWGDGEIFENSKNNSVFDMEEFVSVPSKSLDDV*	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g0578	473	Pfam	Ammonium Transporter Family	23	439	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Vvi14g0578	473	FunFam	Ammonium transporter	5	442	-	-
	Vvi14g0578	473	Gene3D	Ammonium transporter AmtB like domains	5	456	IPR029020	-
	Vvi14g0578	473	NCBIfam	ammonium transporter	21	439	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vvi14g0578	473	PANTHER	AMMONIUM TRANSPORTER MEP2	4	451	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Vvi14g0578	473	ProSitePatterns	Sodium:solute symporter family signature 2.	265	285	IPR018212	-
	Vvi14g0578	473	SUPERFAMILY	Ammonium transporter	16	421	-	-
	Vvi14g0578	473	PRINTS	Rhesus blood group protein signature	245	267	IPR002229	GO:0005886
	Vvi14g0578	473	PRINTS	Rhesus blood group protein signature	214	232	IPR002229	GO:0005886
	Vvi14g0578	473	PRINTS	Rhesus blood group protein signature	118	134	IPR002229	GO:0005886
	Vvi14g0578	473	ProSitePatterns	Ammonium transporters signature.	175	200	IPR018047	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g0578	Vvi-Chr14	7275721	7279576	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g0578	112	467	Inorganic Solute Cotransporters	AT2G38290	58.427	4.10e-140	405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g0578	K03320		-	vvi:100264163	942.954