Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0575 ATGAATACGGCCACCACCATCTCTCAAGCACCTCTCGAGCCCGTGTTTAGTTCTACAAGCTTCATCTCCCTCTCTCTCAAAAATTTCTGGATAAGGGTCCTGTTTGAAAAGCGGAGTAACATGGAGGATCAACATGAAAGGGTTCTAGTGGATGGAAGAGTTTTAGTGGAGGAAAAGTTTCCAGTGGAGCAACCGATTCCAATGAAAAGGGTTCCTGTGGAGGAAAGGTTTCATTTAGAAGAAAGGTTTCCGGTGGAAGGAAGGATTCCAGTGGAAGAAAATTTTGATTCAAGTGTTATGGGCAGGATCAATGAAGATGGGTATGAGAGCATGTCTGGAAGTGGGAACTTAGATTGTAGATTGGAGGATGAGCAAGAAACTTTGGTACTTGAGAGGCCGGCCAAGAAATTGAAGTACCATCGACATACTCAAGAGCAAATTAATGAGCTTGAAACTGGCTTCAAGGAATGGCCTCACCCTGATGATAAACAAAGGTTGGACCTCAGTAGGAAGCTCAACTTGGAGCCTAGACAAGTGAAGTTCTAG 546 0.4414 MNTATTISQAPLEPVFSSTSFISLSLKNFWIRVLFEKRSNMEDQHERVLVDGRVLVEEKFPVEQPIPMKRVPVEERFHLEERFPVEGRIPVEENFDSSVMGRINEDGYESMSGSGNLDCRLEDEQETLVLERPAKKLKYHRHTQEQINELETGFKEWPHPDDKQRLDLSRKLNLEPRQVKF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0575 181 Gene3D - 122 181 - -
Vvi14g0575 181 Pfam Homeodomain 138 180 IPR001356 GO:0003677
Vvi14g0575 181 CDD homeodomain 138 180 IPR001356 GO:0003677
Vvi14g0575 181 ProSiteProfiles 'Homeobox' domain profile. 133 181 IPR001356 GO:0003677
Vvi14g0575 181 SUPERFAMILY Homeodomain-like 125 180 IPR009057 -
Vvi14g0575 181 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 135 181 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0575 Vvi-Chr14 7237703 7238248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0575 93 181 Homeobox Transcription Factor Family AT4G00730 51.685 7.89e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi14g0575 Homeodomain 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0575 K09338 - vvi:100267477 256.914