Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0574 ATGTCTAGCAAACCCCGTCTTCGTGGACCTGGCTCCTCCCGTGAGTCAGGTGAGGTGGTCCTTGAAGTGTCCTCCCTCAACCTTGGAGAACCACGAAAGAGATGGCGCTCGGCTTTCATTGCTATCTACTGTACTCGTGCTCTGCGGTCTGTTGTCAGAGAAATTGTATGCAGGCCGGCAGAAACAGTGATCAATCTGAAAGGAATTGATAAAAATGTCTCGATCGATCCAAGCTTTGCCAGTGATGACACAAAGAAACTCATTAATATGGTGAAGGAGAAAAACTTGGATGCTTTTCATGAGCTTGAAGGAGTGGACCGCATAGCGGCTGCCCTTATGACCAATCCTGAGACTGGAATCCGGGGTGACGATGAGGATTTGAAAAGACGGCGTGAGGCCTTTGGCATAAACAACTATCACAGGCGACCTCCAAAGAGCTTCTTCTATTTTGTTGTGGGTTCTTTGAAGGATCCCACCATTCTTATCCTCTTGGTATGTGCTTCCCTTTCACTTGCATTCGGAATCAAAGAAGAAGGCCCCAGGGAGGGCTGGTACGATGGTGGGAGCATATTCATTGCTGTTTTTATGGTAGTCATTGTGTCTGCTGTCACCAACTTTAGACAGTCCAGGCAATTCAATGAGCTATCAAAAGTTAGCAACAATATCCAAATCGATGTAGTGAGAAATGGGAGGCGACAACGCATCTCTATATTCGATATCGTAGTTGGAGATGTCGTCTGTCTAAAAATCGGGGATCAGATTCCAGCTGATGGAATTTTCTTGGACGGGCACTCATTGCAAGTGGACGAGTCGAGCATGACGGGCGAGAGTGATCATGTTGAAATCAACAAGGATGTGCATCCATTCCTGGTCTCTGGTGCCAAGGTGGTTGACGGGTATGGCCAAATGTTAGTCACATCAGTGGGCATGAACACCTCATGGGGTGAGATGATGAGCTCCATTAGCCATGACAACAACGAGCAGACGCCCCTACAAGTCCGGCTCAATAAACTAACCTCGGCCATTGGAAAGGTTGGCTCTGTAGTTGCTCTTTCTGTTCTTCTAGTCCTGTTGGTTCGATACTTCACCGGGAATACGGTAGATGAAAATGGAAATCGCCAGTACAATGCAATTCCTGAAGGTTTGCCTCTTGCTGTCACACTAACCCTGGCTTACTCCATGAAAAGAATGATGGCTGATCAGGCAATGGTTCGGAGGCTCTCAGCTTGTGAGACAATGGGCTCAGCGACCATCATTTGTACTGATAAAACAGGTACTCTAACCATGAACCAGATGAAAGTGACGGATTTTAAGCTTGGAAAAGAAGCCATTTTAGGCAATATTGCCTCTGCTATTCACCCAAATATTCTTGAACTGTTCCACCAAGGAGTGGCTCTGAATACTACTGCTAGTGTTTACAAAGCTGATTCAGCGTCTGAACCTGAGTTCTCTGGAAGTCCAACTGAAAAGGCAATTCTTTCCTGGGCTGTCCAAGAACTCAATTTGGACATGACCAAAATGAAGCAGAGCTATGACATTCTCCATGTCGAAACCTTCAATTCACAAAAGAAACGCAGTGGTGCCTTAGTTAAAAAGAAGTCGGAAGAGACAATCCATGTTCATTGGAAAGGTGCTGCTGAAATTATTCTAAGAATGTGCTCAAGGTATTATGATAAGTCCGGAGTCGTGAAAACCCTCAATAAACCTGAACAAGAGGGAGTTATGCATCAAATTGAAGGTATGGCTTCACAAGCGCTTCGATGCATCGCATTTGCTCACTCACCAGTTGAAGTTGCCCATCAAAATCTTGTTGAAGACAACTTGATCTTTTTAGGTGTAGTCGGCTTGAAGGATCCATGCCGTCCTTCAGTGAAAGAAGCTATAGACCTTTGCCGCAAGGCAGGAGTTCAAATCAAGATGATCACCGGAGATAACATTCTCACGGCCAGAGCTATAGCTCTCGAGTGTGGGATACTTGATCCAGCCAAGTCAACCGGCAAAGAAATGGTGGAAGGTGTTGAGTTTCGGAGCTATAGTGAAGAAGAGCGGATGACAAAAATTGACAACATTAAAGTAATGGCAAGATCCTCTCCATCTGATAAGCTGTTAATGATACAGAGCTTGAAGAAAAAAGGTGAGGTTGTTGCAGTCACTGGTGATGGCACAAACGATGCACCAGCATTAAAAGAAGCCAATGTTGGACTTGCTATGGGGATTCAAGGCACCGAAGTTGCCAAGGAGAGCTCAGATATTGTCATCTTGGACGATAACTTCAAGTCGGTAGTGTCTATCTTGAAGTGGGGGAGATGTGTCTACAACAATATCCAGAAGTTCATTCAATTCCAGCTCACTGTCAATGTTGCAGCACTTGTTATCAACTTCGTTGCTGCATGTTCTGCTGGTGAAGTCCCATTAACAGCAGTGCAGTTGTTGTGGGTGAACTTAATCATGGACACATTGGGAGCACTTGCCCTAGCCACGGACCGACCAACAGACGAACTCATGGACAGGCCACCCATCGGCTGGAAGGAGCCACTTGTAACGAATGTAATGTGGAGGAACCTCATCTTTCAAGCACTCTATCAGATAATCGTACTCCTGACGCTGCAATTCAAGGGCAGATCCATTTTCAAGGTACGAGAATTGGTGAAGAACACAATCATTTTCAATACTTTTGTCCTTTGTCAAGTGTTTAATGAGTTCAATGCAAGAAAGCTAGAGAGGAAGAATGTCTTCCAAGGGATCCTCAAGAACAGGTTGTTTCTTTCGATTGTGGCTGCAACTATCATTCTTCAAGTTTTGATGGTGGAGCTTTTACGAAAATTTGCAGATACTGAGAGATTGAATTGGATGCAATGGGGCATATGTACTATATTAGCTTCCTTATCTTGGCCACTTGCTTGGGTTGTCAAGTGCATACCTGTTCCAAAAACACCATTTCTGAACTATCTTAAGTGGAAGAGGTCCTGA 2970 0.4495 MSSKPRLRGPGSSRESGEVVLEVSSLNLGEPRKRWRSAFIAIYCTRALRSVVREIVCRPAETVINLKGIDKNVSIDPSFASDDTKKLINMVKEKNLDAFHELEGVDRIAAALMTNPETGIRGDDEDLKRRREAFGINNYHRRPPKSFFYFVVGSLKDPTILILLVCASLSLAFGIKEEGPREGWYDGGSIFIAVFMVVIVSAVTNFRQSRQFNELSKVSNNIQIDVVRNGRRQRISIFDIVVGDVVCLKIGDQIPADGIFLDGHSLQVDESSMTGESDHVEINKDVHPFLVSGAKVVDGYGQMLVTSVGMNTSWGEMMSSISHDNNEQTPLQVRLNKLTSAIGKVGSVVALSVLLVLLVRYFTGNTVDENGNRQYNAIPEGLPLAVTLTLAYSMKRMMADQAMVRRLSACETMGSATIICTDKTGTLTMNQMKVTDFKLGKEAILGNIASAIHPNILELFHQGVALNTTASVYKADSASEPEFSGSPTEKAILSWAVQELNLDMTKMKQSYDILHVETFNSQKKRSGALVKKKSEETIHVHWKGAAEIILRMCSRYYDKSGVVKTLNKPEQEGVMHQIEGMASQALRCIAFAHSPVEVAHQNLVEDNLIFLGVVGLKDPCRPSVKEAIDLCRKAGVQIKMITGDNILTARAIALECGILDPAKSTGKEMVEGVEFRSYSEEERMTKIDNIKVMARSSPSDKLLMIQSLKKKGEVVAVTGDGTNDAPALKEANVGLAMGIQGTEVAKESSDIVILDDNFKSVVSILKWGRCVYNNIQKFIQFQLTVNVAALVINFVAACSAGEVPLTAVQLLWVNLIMDTLGALALATDRPTDELMDRPPIGWKEPLVTNVMWRNLIFQALYQIIVLLTLQFKGRSIFKVRELVKNTIIFNTFVLCQVFNEFNARKLERKNVFQGILKNRLFLSIVAATIILQVLMVELLRKFADTERLNWMQWGICTILASLSWPLAWVVKCIPVPKTPFLNYLKWKRS* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0574 989 SMART Cation_ATPase_N_a_2 98 175 IPR004014 -
Vvi14g0574 989 PRINTS P-type cation-transporting ATPase superfamily signature 269 283 - -
Vvi14g0574 989 PRINTS P-type cation-transporting ATPase superfamily signature 420 434 - -
Vvi14g0574 989 PRINTS P-type cation-transporting ATPase superfamily signature 634 644 - -
Vvi14g0574 989 PRINTS P-type cation-transporting ATPase superfamily signature 718 737 - -
Vvi14g0574 989 PRINTS P-type cation-transporting ATPase superfamily signature 612 623 - -
Vvi14g0574 989 PRINTS P-type cation-transporting ATPase superfamily signature 742 754 - -
Vvi14g0574 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 103 975 IPR023298 -
Vvi14g0574 989 Gene3D - 417 763 IPR023214 -
Vvi14g0574 989 Gene3D - 153 971 - -
Vvi14g0574 989 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 426 624 IPR023299 GO:0000166
Vvi14g0574 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 422 428 IPR018303 -
Vvi14g0574 989 FunFam Calcium-transporting ATPase 613 763 - -
Vvi14g0574 989 NCBIfam HAD-IC family P-type ATPase 499 668 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0574 989 NCBIfam HAD-IC family P-type ATPase 689 798 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0574 989 NCBIfam HAD-IC family P-type ATPase 190 447 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0574 989 NCBIfam calcium-translocating P-type ATPase, PMCA-type 83 975 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi14g0574 989 PANTHER CATION TRANSPORTING ATPASE 83 975 - -
Vvi14g0574 989 Gene3D - 430 619 IPR023299 GO:0000166
Vvi14g0574 989 FunFam Calcium-transporting ATPase 430 619 - -
Vvi14g0574 989 SFLD p-type atpase 402 771 IPR044492 -
Vvi14g0574 989 SFLD C1.7: P-type atpase like 402 771 - -
Vvi14g0574 989 FunFam Calcium-transporting ATPase 197 322 - -
Vvi14g0574 989 FunFam Calcium-transporting ATPase 735 977 - -
Vvi14g0574 989 PRINTS H+-transporting ATPase (proton pump) signature 718 734 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0574 989 PRINTS H+-transporting ATPase (proton pump) signature 750 775 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0574 989 PRINTS H+-transporting ATPase (proton pump) signature 574 592 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0574 989 Pfam E1-E2 ATPase 223 398 - -
Vvi14g0574 989 Pfam Cation transporter/ATPase, N-terminus 103 170 IPR004014 -
Vvi14g0574 989 Pfam haloacid dehalogenase-like hydrolase 418 732 - -
Vvi14g0574 989 Pfam Cation transporting ATPase, C-terminus 803 972 IPR006068 -
Vvi14g0574 989 SUPERFAMILY Calcium ATPase, transduction domain A 222 320 IPR008250 -
Vvi14g0574 989 Gene3D - 124 322 - -
Vvi14g0574 989 SUPERFAMILY HAD-like 418 823 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0574 Vvi-Chr14 7207252 7210299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0574 30 989 Primary Pumps ATPases AT3G63380 62.326 0.0 1247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0574 K01537 - vvi:100248643 1912.12