Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0573 ATGGCCAAGTTTTTAGCGGATGATCGCTTGGCTTCAAAGCCTCACCTCCGATGGCGGTTCGCTTTCATTGCCATCTACTTCACCAAGGTGCTTGATTCTTTGTCTAAGAGAACTGTGAAGAAGAGCATCCCAGTACTGGGCCCTGGAGTACTAAGCTCCCGGTCTTATCTTTCCATCGATGTTCAGGATGTCCATGAAGATGATTCTGGTCATGGTCGCTCGGGTGATGAGCATGTGTTGCCCTTCCGCAATGTTGGTCAGAGAATGCTCACTGAGATGGTAAGAGACAAGGACTTGGAACGTTTGCGTCAATTTGGAGGAGTGAAGCAGCTTCCTGCACTTCTGGGGACCAACGAAAAGAACGGTATCGATGGCCACGAGGCTGATCTTATTCACCGAAGAAATGTCTTCGGATCCAATGAGTACACGAAGCCGCCTAAGAAAGGTTTCCTCAGTTTTGTTGTTGAAGCATCCAAGGATACCACCATTATTATACTTTTGATATGCGCAGCCCTTTCTCTAGGATTTGGAATCAAAGAGGAAGGCCCTAGAGAAGGATGGTATGATGGGGGGAGTATTATTGTGGCCATCCTTTTAATTGTTGCTGTGTCTTCTATCAGTAACTTCAGGCAATCCGGACAGTTTCACAAGTTTTCAAGTGAGAGCAGTGACATAAGAGTGCAAGTGGTGAGACAAGGACGGAGGCAACCTGTGTCCATCTTCCAACTTGTAGTGGGGGATATTGTGTTTTTGAATATTGGGGATCAGGTTCCTGCTGATGGGTTGTTCATGGAGGGTCATTCCTTGAAAGTGGATGAGTCAAGCATGACTGGTGAAAGTGACCATGTTGAGATCAATGAGAAAGAGAATCCATTCATGTTCTCTGGCACAAAGGTTTCGGATGGATTTGGTACAATGCTTGTCACTTCCGTAGGGATGAACACAGCATGGGGCGAGATGATGAGCTCCATTCGTCGTGAATTGGACGAGCAGACTCCATTGCAGGCTCGCCTCGACAAGCTGGCTTCAACTATAGGGAAGCTTGGTTTGGCTGTGGCTCTGATTGTTCTTGTGGTTCTCTTCATCCGGTACTTCACTGGAAACATTGAAGATGATAGTGGGAACAGGGAATTCAATGGTAGCAAGACAAAGATCGACAACGTGATGAATTCAGTTGTGCATCTTGTTTCTGCAGCAGTTACCGTCCTGGTGATCGCCATTCCAGAGGGTTTGCCTATGGCTGTTACACTAACTCTGGCCTATTCCATGAGACGGATGATGACTGACCAAGCCCTGGTCAGGAAACTCTCTGCATGTGAAACAATGGGCTCTGTCACAACTATTTGCACAGACAAAACTGGCACCCTTACCTTAAACAAGATGAAGGTGGTTGAGTTTTGGCTTGAGAGTGAAGTAATAAAGGATGAAACTTACAGGGGAGTAGCTCCAACTGTTCTTGAATTGTTGAAACAGGGAGTTGGTTTGAACACAACTGGCAGCGTTTGCAAACTTCCTTCCACATCAGTTCCAGAGATCTCTGGTAGCCCCACAGAGTCGGCAATCCTCACATGGGCACTGGTTGATTTGGGCATGGACATTGACGAACAGAAGCTAAGTTTTGAGATTCTCCATGTAGAGGCTTTCAATTCACAGAAGAAACGAAGTGGGGTTCTGGTGAACAGAATCGCTGATAACACGATTCACATACATTGGAAGGGAGCTGCAGAGATGATACTAGCCATGTGTTCACACTATTATGACAAAAGTGGGATAGTAAAAGTAATGGATGACAAGAAAAGGGGGCAGTTTGGAGGACTTATTAGAGACATGGCAGCTAAAAGCCTGCGTTGCATTGCCTTTGCCTATAAACAGGCTCTACAAGAAAAGCTTGAAGAAACTGGCATGATCTTGTTGGGGCTAGTAGGCTTGAAGGACCCGTGTCGACCAGGAGTAAGAAGAGCAGTAGAAGTTTGTAGGGATGCTGGAGTGAACGTTAAAATGATCACTGGAGACAACATTTTCACTGCAAAAGCAATAGCTATGGAATGTGGGATTCTCAAACCTGATGAGGATTTCAACAATGCAGTTGTGGAAGGTGTAACATTCAGAAATTACTCTCACAGAGAGAGGATGGATAAGATTGATATCATCCGAGTAATGGCCAGATCATCCCCATTTGACAAGCTTTTGATGGTGCAGAGCTTGAAGAAGAAAGGCCATGTGGTAGCAGTCACAGGTGATGGCACCAATGATGCCCCTGCTCTAAAAGAAGCAGACATTGGGCTCTCCATGGGAATTCAAGGCACAGAAGTTGCAAAAGAGAGCTCAGACATTGTCATCCTGGATGACAACTTCACTTCTGTGGTGACAGTTATGAAATGGGGAAGATGTGTATATAATAACCTTCAAAAGTTCATCCAGTTTCAACTCACAATCAATGTTGCTGCCCTGGGCATCAATTTTGTTGCTGCAGTTGCTTCTGGGAAAGTTCCTCTTACTGCTGTCCAGCTGTTGTGGGTGAACCTGATACAGGATACCTTTGGAGCTTTAGCCTTGGCCACTGAGCAACCCACAAATGATCTATTGATGAAGCCACCTGTGGGTCGATCCAAGCCACTCATAACTAATGTCATGTGGAGGAATCTCATTTCTCAGGCCCTTTACCAGATTTCTGTCTTGCTGATCCTACAGTATAAGGGAAGTTCGATCTTTGGTGTGGATGAGAAGATTAACAACACCCTGATTTTCAATACTTTTGTCCTCTGCCAAGTCTTCAACGAGTTCAATGCTAGGAACATGGACAAAAAGAACAAGTTCTTCTTCAAGGGGATACTTAAGAACAGACTGTTTGTAGGGATCATTGGGATTACTATAGCTCTTCAAGTGGTGATGGTTGAGTTTCTGAAGAGGTTTGCCAATACTGAGAGGCTGGATTGGGGCCAATGGGGTGTGTGCATCGGCCTTGCAGCTTTATCTTGGCCAATTGACTGGCTTGTGAAATACCTTCCAGTTTCTGCAAATTAG 3024 0.454 MAKFLADDRLASKPHLRWRFAFIAIYFTKVLDSLSKRTVKKSIPVLGPGVLSSRSYLSIDVQDVHEDDSGHGRSGDEHVLPFRNVGQRMLTEMVRDKDLERLRQFGGVKQLPALLGTNEKNGIDGHEADLIHRRNVFGSNEYTKPPKKGFLSFVVEASKDTTIIILLICAALSLGFGIKEEGPREGWYDGGSIIVAILLIVAVSSISNFRQSGQFHKFSSESSDIRVQVVRQGRRQPVSIFQLVVGDIVFLNIGDQVPADGLFMEGHSLKVDESSMTGESDHVEINEKENPFMFSGTKVSDGFGTMLVTSVGMNTAWGEMMSSIRRELDEQTPLQARLDKLASTIGKLGLAVALIVLVVLFIRYFTGNIEDDSGNREFNGSKTKIDNVMNSVVHLVSAAVTVLVIAIPEGLPMAVTLTLAYSMRRMMTDQALVRKLSACETMGSVTTICTDKTGTLTLNKMKVVEFWLESEVIKDETYRGVAPTVLELLKQGVGLNTTGSVCKLPSTSVPEISGSPTESAILTWALVDLGMDIDEQKLSFEILHVEAFNSQKKRSGVLVNRIADNTIHIHWKGAAEMILAMCSHYYDKSGIVKVMDDKKRGQFGGLIRDMAAKSLRCIAFAYKQALQEKLEETGMILLGLVGLKDPCRPGVRRAVEVCRDAGVNVKMITGDNIFTAKAIAMECGILKPDEDFNNAVVEGVTFRNYSHRERMDKIDIIRVMARSSPFDKLLMVQSLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVMKWGRCVYNNLQKFIQFQLTINVAALGINFVAAVASGKVPLTAVQLLWVNLIQDTFGALALATEQPTNDLLMKPPVGRSKPLITNVMWRNLISQALYQISVLLILQYKGSSIFGVDEKINNTLIFNTFVLCQVFNEFNARNMDKKNKFFFKGILKNRLFVGIIGITIALQVVMVEFLKRFANTERLDWGQWGVCIGLAALSWPIDWLVKYLPVSAN* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0573 1007 Gene3D - 446 790 IPR023214 -
Vvi14g0573 1007 Pfam Cation transporting ATPase, C-terminus 830 1002 IPR006068 -
Vvi14g0573 1007 SUPERFAMILY Calcium ATPase, transmembrane domain M 106 1004 IPR023298 -
Vvi14g0573 1007 Pfam haloacid dehalogenase-like hydrolase 445 759 - -
Vvi14g0573 1007 PANTHER CATION TRANSPORTING ATPASE 82 1004 - -
Vvi14g0573 1007 PRINTS H+-transporting ATPase (proton pump) signature 603 621 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0573 1007 PRINTS H+-transporting ATPase (proton pump) signature 745 761 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0573 1007 PRINTS H+-transporting ATPase (proton pump) signature 777 802 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0573 1007 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Vvi14g0573 1007 FunFam Calcium-transporting ATPase 762 1006 - -
Vvi14g0573 1007 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 651 IPR023299 GO:0000166
Vvi14g0573 1007 Pfam E1-E2 ATPase 224 427 - -
Vvi14g0573 1007 Pfam Cation transporter/ATPase, N-terminus 107 173 IPR004014 -
Vvi14g0573 1007 SFLD p-type atpase 431 798 IPR044492 -
Vvi14g0573 1007 Gene3D - 156 1001 - -
Vvi14g0573 1007 FunFam Calcium-transporting ATPase 459 646 - -
Vvi14g0573 1007 SUPERFAMILY HAD-like 447 849 IPR036412 -
Vvi14g0573 1007 PRINTS P-type cation-transporting ATPase superfamily signature 661 671 - -
Vvi14g0573 1007 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Vvi14g0573 1007 PRINTS P-type cation-transporting ATPase superfamily signature 745 764 - -
Vvi14g0573 1007 PRINTS P-type cation-transporting ATPase superfamily signature 769 781 - -
Vvi14g0573 1007 PRINTS P-type cation-transporting ATPase superfamily signature 639 650 - -
Vvi14g0573 1007 PRINTS P-type cation-transporting ATPase superfamily signature 272 286 - -
Vvi14g0573 1007 CDD P-type_ATPase_Ca_PMCA-like 132 878 - -
Vvi14g0573 1007 FunFam Calcium-transporting ATPase 202 325 - -
Vvi14g0573 1007 FunFam Calcium-transporting ATPase 640 790 - -
Vvi14g0573 1007 NCBIfam HAD-IC family P-type ATPase 718 828 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0573 1007 NCBIfam HAD-IC family P-type ATPase 390 471 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi14g0573 1007 Gene3D - 459 646 IPR023299 GO:0000166
Vvi14g0573 1007 SUPERFAMILY Calcium ATPase, transduction domain A 226 323 IPR008250 -
Vvi14g0573 1007 NCBIfam calcium-translocating P-type ATPase, PMCA-type 84 1004 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi14g0573 1007 SFLD Haloacid Dehalogenase 431 798 - -
Vvi14g0573 1007 Gene3D - 131 325 - -
Vvi14g0573 1007 SMART Cation_ATPase_N_a_2 107 178 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0573 Vvi-Chr14 7173849 7176872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0573 13 1005 Primary Pumps ATPases AT3G63380 64.558 0.0 1259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0573 K01537 - vvi:100246906 1933.69