Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0554 ATGGGAAAGGCCGGTAGGTGGATTAGGAGCCTCTTGGGAGGGAAAAAGGAGGAGAAATACAAGAAGAAATATGGCTCATTTTCTGGGGAGAATGTGGAGATCTCGACTGCAATTGTACCAGTAACTCCAAAGGAGAAGCGGAGATGGAGCTTCGGACATAAGAGTTCAAGAGCCTTGGGCTCAATTGTCTTTCCCCCACTTGTAAACGAGGGCAGTCCGAAGCAGAAGAATGAGCAGAGCTTTGGCATGGCTGTGGCAGTTGCAGCCACTGCAACTGCTCAAACAACTATGGCAGAAACAAATGGAGCAGGAAAACACAGCGAGGTTGAACACGCTGCTGCCACGAAGATTCAAGCCATTTTTCGTTCTTATTTGGCCAGGAAAGCATTGTGTGCTTTAAGGGGACTAGTGAAGTTACAAGCACTTGTGAGGGGTCATCAGGTGAGAAAACAAGCCAATACGACCCTGCGGCGCATGCATGCACTGATGGCGATTCAAGTTAGGGCACGGGTTCAGAGAATTCAGGTGGCTGAGGAAGCACAGATTGTTGTGAATAGGCAATCATCGGTTCACAGAAATTTCCATCAGGACAACTGGCTTAGGATAGGACTTGGGGAGAAAATCAAAGTGAATCAGGATGGAACACAGGGAGATTCCAATAATAGACATGGCTTTCTGAATTACTCACAAATACAAAGAATAGAGCAAGGGATCATCAAATATTATTCTGGAGAGCTTACTCCCCATCACGATTCTCCCATGTACAGATCAAACTCAACAAGAAAATCTTTCTGTTTTCCTCAAGCAGACTGCCATGCAGACTCATCTCCTCACTACCCTTTCTTACCAAACTACATGGCCAACACTGAATGTTCAAAGGCAAAGGCCAGGTCCCAAAGTGAACCAAAACAACGACCCAAATGGGGCAACAAGCAAAAGAGCAGACAAACAACATTAGTGGGAGAAGCAAGTGGCTCACAACATGTTCAGAGACAACATCCAACCTCACATGCAGGAAGTATTTCTATTGAAAACCCAGAGCCCTGGTTAATCAAGCTCTATCAATCAACAATGGCTCTCAAAGACAGTGAGTGCGATTCAAATAGCACGGTAACCAGCACTTCCAACTACTGCACACCTGCAGTTGCTTATGAGCCCCATGTGACCATGTTCTAA 1176 0.4592 MGKAGRWIRSLLGGKKEEKYKKKYGSFSGENVEISTAIVPVTPKEKRRWSFGHKSSRALGSIVFPPLVNEGSPKQKNEQSFGMAVAVAATATAQTTMAETNGAGKHSEVEHAAATKIQAIFRSYLARKALCALRGLVKLQALVRGHQVRKQANTTLRRMHALMAIQVRARVQRIQVAEEAQIVVNRQSSVHRNFHQDNWLRIGLGEKIKVNQDGTQGDSNNRHGFLNYSQIQRIEQGIIKYYSGELTPHHDSPMYRSNSTRKSFCFPQADCHADSSPHYPFLPNYMANTECSKAKARSQSEPKQRPKWGNKQKSRQTTLVGEASGSQHVQRQHPTSHAGSISIENPEPWLIKLYQSTMALKDSECDSNSTVTSTSNYCTPAVAYEPHVTMF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0554 391 ProSiteProfiles IQ motif profile. 134 161 IPR000048 GO:0005515
Vvi14g0554 391 SMART iq_5 109 131 IPR000048 GO:0005515
Vvi14g0554 391 SMART iq_5 132 153 IPR000048 GO:0005515
Vvi14g0554 391 Pfam IQ calmodulin-binding motif 111 130 IPR000048 GO:0005515
Vvi14g0554 391 Pfam IQ calmodulin-binding motif 137 151 IPR000048 GO:0005515
Vvi14g0554 391 Gene3D - 108 163 - -
Vvi14g0554 391 MobiDBLite consensus disorder prediction 311 342 - -
Vvi14g0554 391 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Vvi14g0554 391 Pfam Protein of unknown function (DUF4005) 262 324 IPR025064 -
Vvi14g0554 391 PANTHER IQ-DOMAIN 5-RELATED 1 322 - -
Vvi14g0554 391 MobiDBLite consensus disorder prediction 292 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0554 Vvi-Chr14 6782262 6784048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0554 1 377 IQD Protein Family AT4G14750 36.967 1.70e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0554 - - vvi:100245132 761.525