Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0553 ATGGAGCAATACGAAATACTTGAGCAAATTGGGAAAGGGGCTTTTGGTTCTGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAGAAGTATGTCCTGAAGAAGATTCGTCTTGCTCGCCAGACTGATAGGACCCGCAGATCTGCGCATCAGGAGATGGAGCTTATTTCTAAAATGCGGAATCCATTCATTGTTGAGTACAAAGATTCCTGGGTGGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTGAAGGAGGAGACATGGCTGAAGCTATAAAGAAAGCCAATGGCGTTCTTTTCTCTGAAGAGAAACTCTGTAAGTGGCTTGTTCAACTTTTAATGGCACTTGAGTACTTGCACATGAATCACATCCTTCATCGCGATGTTAAGTGTTCAAACATATTCTTGACAAAAGATCAAAATATTCGTCTTGGTGATTTTGGACTTGCCAAAATGTTGAGCTCGGATGATCTTGCCTCCTCTATTGTGGGAACACCCAGCTATATGTGCCCTGAGCTTCTTGCTGATATACCTTATGGCTCAAAGTCAGATATTTGGTCATTAGGATGTTGTATATACGAAATGACTTCTCATAAGCCTGCATTTAAAGCATTTGATATGCAAGCGCTGATCAACAAAATAAATAAGTCTATAGTGGCTCCACTTCCAACTAAGTACTCTGGTGCATTTCGGGGTCTTGTTAAAAGCATGTTGCGGAAGAACCCAGAACTGCGGCCAAGTGCTGCAGAGCTGCTCAGGCACCCGCACCTTCAGGCTTATGTCCTTAAAATTCATCTTAAATCTAATAGCCCTAGGTATAATACTTTACCTATTTGCTGGTCTGAACCCAATCACTCAAAAAAATTTAGATTTCCAGAGCCAGAGGATGCCCCTATTTCAACGTACAGAGAGAAGAGGCAGTCTTTTTGCAATGACAGGAATTTGAATCCAAGTATATCTGGAGCTGAGCAAGACTTTTTGAGTTCTGCCCAAAGAAAACATAGTACCCCAGTTTGCCTGAACCAAAGGTTGGTAGAAATATCTTTTGGAAGCACCCATGAAGAGACAACCATTATTAGGTCTGTAGCTTCAAAAAGTACAAATATCACAAAGACTCCAAGACTGACTCCAGCTAAAGCTTCAGCCACACCTAAGAGATGGACGGAGCCATCAAAAGATCGTGAACTGTTTCGAGCTTCACAAACTCCTGTGAAAAAATCTGCCCCAGCAGCTCGCAGAGCATCTCTACCATTGCCAAGGAGATCTACAGTTAAAGAATCCGCTTGCAGGTCCAAGATTGGTCTCCTTCACCACATAAATTCCCCAGATGTTTCTGTCAATGCCCCTCGAATTGACAGGATAGCTGAATTCCCATTGGCTTCATACGATAGTCCCTTCTTTCCTGTTCCAAAAACTTCATCAACCTCAGCACAAGGCTCCTCTAACTCCATAATTGGTGATCATTCAATCACGAAGGATAAATGCACAATTCAGGTTTGTGAAAGAGCTCTTGCCAGGCTGAGTTTCACTAATGCTTGGCCAGTAACTCAAGGCACCATGTTTGAGGTGGATGGGGAGGATGCAGGTAACTGCTCTGATCAAAATGCCACAGCTGGTGCATCAAGCCAGGCCTCATCAGACTTACGCCGCCGTCGATTTGATACCTCATCGCACCGGCAGCGTGCTGAGGCTTTGGAAGGGTTGCTAGAATTTAGTGCAAGATTGATGCATGAGGAAAGGTATGAAGAGCTTGGGGTTTTACTGAAGCCATTTGGGCCTGGAAAGGTTTCTCCTAGGGAAACTGCTATCTGGTTAACTAAGAGCTTCAAGGAAAATACAGGCAAGCAGGAAGATCAGTGTCCATGA 1869 0.4361 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKMRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFSEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDQNIRLGDFGLAKMLSSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDMQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLRHPHLQAYVLKIHLKSNSPRYNTLPICWSEPNHSKKFRFPEPEDAPISTYREKRQSFCNDRNLNPSISGAEQDFLSSAQRKHSTPVCLNQRLVEISFGSTHEETTIIRSVASKSTNITKTPRLTPAKASATPKRWTEPSKDRELFRASQTPVKKSAPAARRASLPLPRRSTVKESACRSKIGLLHHINSPDVSVNAPRIDRIAEFPLASYDSPFFPVPKTSSTSAQGSSNSIIGDHSITKDKCTIQVCERALARLSFTNAWPVTQGTMFEVDGEDAGNCSDQNATAGASSQASSDLRRRRFDTSSHRQRAEALEGLLEFSARLMHEERYEELGVLLKPFGPGKVSPRETAIWLTKSFKENTGKQEDQCP* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0553 622 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 571 - -
Vvi14g0553 622 MobiDBLite consensus disorder prediction 527 558 - -
Vvi14g0553 622 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0553 622 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi14g0553 622 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Vvi14g0553 622 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vvi14g0553 622 MobiDBLite consensus disorder prediction 375 423 - -
Vvi14g0553 622 SUPERFAMILY Protein kinase-like (PK-like) 1 312 IPR011009 -
Vvi14g0553 622 MobiDBLite consensus disorder prediction 531 547 - -
Vvi14g0553 622 MobiDBLite consensus disorder prediction 387 401 - -
Vvi14g0553 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vvi14g0553 622 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vvi14g0553 622 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Vvi14g0553 622 CDD STKc_Nek 3 258 - -
Vvi14g0553 622 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g0553 622 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0553 Vvi-Chr14 6774508 6781209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0553 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 9.44e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vvi14g0553 Pkinase 9.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0553 K08857 - vvi:100241803 1235.71