Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0552 ATGGAAGCCGATAATGAGGTGGAGTTGGTTTTTTTTTGTTTGTTTGTTTATGGTGGGAACAGGAAGCTAGCAGAGCAAGGGTTCAAAAGGAGTGCTGAGAAGTGCAAGGAGAAATTTGAACAAGAAAGTAGGTACTTCAACACTACTATGAATTACAGTAAGAACTACAGGTTTTTCAGTGAGCTTGAAGAACTGTATCATGGTGAGAGCCCTCATCAGCAGGATGTGGCTGAAAAGAATCAGAAGGTGGTCGAGAAACCAAATGAAGAAGACAGGAGTTTGGAAGAGGATTCAAGAAATGAAACAGTGGTGGGAAACCCATGTTTGGAAACTGAGAAAGTGGAGGATAAATCCAAGGGCAAGAAGAGAAAAAGGCACACCCAGAACAAGTCGTTTGAAATGTTCAAGGGCTTTTGTGAGGCTGTTGTGAGCAAGATGATGGCCCAACAAGAGGAAATGCACAACAAGCTTCTTGAAGATATGGTGAAGAGAGATGAAGAGAAGACGGCGAGAGAAGAAGCTTGGAAGAAGCAAGAGATGGATAGGATTAACAAAGAGATTGAGATTAGGGAGCATGAACAAGCCATTGCAGGTGATAGGCAGGCTACAATCATTGGATTCTTGAAGAAATTCACATCGAGTAATCCTGTGGAAACCCCATGCTTTGGCAATAATGAAGGTGAACTTTCTAAGGTACCAAGCAGGTCCAACCCACCAACTTCACCTTCCTCAATTCTCCCACAAAACCCTAATCCCACATCCCATCTCAGTCCCCAAAACAAACAGCTGGAAGCACCTACTTCATCCAGGAAGGTTATAGTACCCCATCAAAACCCTTGCTCTTTGACCACCCCAACCAACCCAAATGCTCCCATTGATGAAGCCCAACCATCTCAAAACCCTACTTCCATGGTCCTAGAGTCCCAAAACCCCAATTCCCTCAACACCCAAAAGAGGCCATCAGCACCCACTTCATTTCCATCCATTACTGATCACAGAGATCAAGAACTTGGGAAGAGATGGCCAAGAGACGAAGTGCTGGCACTGATAAACCTAAGATGCAGTCTAAATGTAGAAGACAAGGAAGGCGCAAAGGGGCCTCTATGGGAGAGAATATCACAAGGGATGCTAGCTCTGGGGTACAAGAGGAGTGCAAAGAGATGTAAAGAAAAATGGGAGAACATAAACAAGTACTTCAGGAAAACCAAAGATGTTAGCAAGAAGAGATCACTTGACTCTAGGACATGCCCCTACTTTCACCAATTAAGCACTTTGTACAGCCAAGGAACCCTGGTAGTACCCTCCTCCGAAGCCCCAGCCCCGGAAAACTGCTTGAATTCATCGGAAAACCACTCATCATTACCGGAAAACCAAGTGGGTGGATCATCCAGCAATACCAATATGCATGCTGCAGATGAAGGTGAGGAGAATGCGGCTCAACTACCAGCTTATGATTTCAAATTTTAG 1467 0.4465 MEADNEVELVFFCLFVYGGNRKLAEQGFKRSAEKCKEKFEQESRYFNTTMNYSKNYRFFSELEELYHGESPHQQDVAEKNQKVVEKPNEEDRSLEEDSRNETVVGNPCLETEKVEDKSKGKKRKRHTQNKSFEMFKGFCEAVVSKMMAQQEEMHNKLLEDMVKRDEEKTAREEAWKKQEMDRINKEIEIREHEQAIAGDRQATIIGFLKKFTSSNPVETPCFGNNEGELSKVPSRSNPPTSPSSILPQNPNPTSHLSPQNKQLEAPTSSRKVIVPHQNPCSLTTPTNPNAPIDEAQPSQNPTSMVLESQNPNSLNTQKRPSAPTSFPSITDHRDQELGKRWPRDEVLALINLRCSLNVEDKEGAKGPLWERISQGMLALGYKRSAKRCKEKWENINKYFRKTKDVSKKRSLDSRTCPYFHQLSTLYSQGTLVVPSSEAPAPENCLNSSENHSSLPENQVGGSSSNTNMHAADEGEENAAQLPAYDFKF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0552 488 PANTHER FI21293P1 21 462 - -
Vvi14g0552 488 MobiDBLite consensus disorder prediction 69 127 - -
Vvi14g0552 488 Gene3D - 341 401 - -
Vvi14g0552 488 MobiDBLite consensus disorder prediction 229 331 - -
Vvi14g0552 488 CDD GT1 339 403 - -
Vvi14g0552 488 MobiDBLite consensus disorder prediction 437 488 - -
Vvi14g0552 488 MobiDBLite consensus disorder prediction 69 99 - -
Vvi14g0552 488 MobiDBLite consensus disorder prediction 215 337 - -
Vvi14g0552 488 Pfam Myb/SANT-like DNA-binding domain 339 424 IPR044822 -
Vvi14g0552 488 ProSiteProfiles Myb-like domain profile. 340 396 IPR001005 -
Vvi14g0552 488 MobiDBLite consensus disorder prediction 437 471 - -
Vvi14g0552 488 FunFam Trihelix transcription factor GT-2 341 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0552 Vvi-Chr14 6758687 6760153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0552 20 488 Trihelix Transcription Factor Family AT5G28300 38.869 2.03e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi14g0552 Myb_DNA-bind_4 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0552 - - vvi:100255432 948.732