Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0547 ATGGATACACCAGAGAAGTACCAGATCGCAACTCCTATTTCCAAATATGAGGATTCTCCTGTCTTTAATTACATCAACAGTCTCTCACCTATTAAGCCAGTCAAGTCCATACCCACTGATCAGACATTCAGCTCACTTAGTTTTGCATCTCCATCATCTGTGTTTACTTCACCACATATCAATCCCCAGAGAGAATCAAGGTTCTTAAGAAGGCAACAATTTACAGACCCATCAAAACCTGAGTTCTCTCGCCGTGATAATGATGAAAATACAAGTGAAGGTGTTTTGGATGCTGTTCATCAATTGGATTATCTTGATCCAGGGAGTTCAGATACGGGGATTACTATAGATCCATCCAACAAAGACCCAAAATCAGATGCTGGCTTGCCACAATCCCTGAAATATGATTGCACTAGTCCGGAGGATAACAGAATTCCCCACAATGATATTGAGACAGAAACTATGCCAGAAGTGGCAATCAGGCCTGCTTCACATGTTCATTTTGTTCAAGGTGTCTCAAAAGAGAGACGACAGTCATTTGAAATTGAAACAGAATTACGTGGAATCTGTCAAATTGGGGAAAGTAAGGAAGCAGCAGGATGTGATTGGGGGAAATTGATTTCTGATGATACTGATCAGTTGATATTTGATTCTTCCATCAGCAAAGAGCATTCTGAGGTACAGGATCACAAAACAGTGGATCCTGGGACATACTCCTTTATTGCAACTGTGCTACAACTCCCTCATGATGAAATTGATGATTTACAGAAATCACAATCTATGGGTTCTGTTGATTCTTATGAACAATGTGAAACTGAAGAAACAGTTACTAAATCAAGAGATGTTGGAGAGATAAAAGAAACAGATCAAACACCAGCAGTACCTTCTAGCACTCTACTGGACAAACTAGTTGTTAGTGATTCAAGGGCTGAAGTGGATGACAAGAAGGGCAAAAAGTGCATGCAGTCCAGCTGCAAGCAGCTTAGTATACGAAGGCGCTGTTTACTTTATGAGATGACAGGAGCTCATAAAAAGAAATTGATATACAATTCTGATAGTGGTTCTTCAGCCTCATCACAATCCGATGGTAAAGTTTCCTCTGATGAAAAGCAGTTCATGCCATTTAAGCCTGGAAATATTCATCCATCATCCATGTTAGCTGGAATTGGTTTGCACTTGAATGCTCTTGCAACCACTGCAGAGGATGGTAATAAAGTTGTTAAGCATGAGCCTTTGGCTTCTGAAAGGAAACCAATAAGTATGTCAAGATCCATCCCCTCTTTGAATTCTATGTCATTAGGTCAGACACCTCTAAACAAATCCTTGACTCCAGACCTTTTGGAAAGGGATTTAGTTCGATTTGACAGTGAAGTTCAGGCCACTGAAGATGCTTCTCAGACATCAGAATTTGGAGTTAGCGAAGAGTTTAACCATGGTAGTCCAAAAAGGAAGAGGCGCAGGTCAGAACAAGCTGCGGAAAATGAGGCCTGTAAGCGCTGCAACTGTAAGAAGTCAAAATGCTTGAAGCTTTATTGTGAATGCTTTGCTGCTGGTCTCTACTGTGTTGAGCCTTGCTCATGTCAAGATTGCTTTAACAAGCCTGTTCATGAAGACACTGTCCTGCAAACTCGTAAACAGATTGAATCTCGCAACCCACTTGCATTTGCTCCTAAAGTGATTAGAAGCTCTGATTATGTTCCAGAATTTGGGGACGAATCTAACAAGACTCCAGCTTCAGCCCGACATAAGAGAGGATGCAACTGTAAAAAATCGAGTTGTTTAAAGAAATACTGTGAATGCTTTCAGGGTGGAGTAGGATGCTCTATCAGCTGCAGGTGTGAAGGATGTAAAAATACTTTTGGGCGAAAGGATGGAACAGAAGAAGCTGAACTAGATGAGGAAGAAACAGAAGAGACCTGTGACAAGAATTCATTGGACACAAGTTCACAGTATGATGTAGTCCTGAGGGGTGAAGAGGAGCATTCAGATCTTGTTCCTCCAGTAACGCCTTCTTCTGAGATTAGCAGACCTCTGGTTCAACTGCCATTTACACTTGGTGGTGGGAAGCCCCCACAATCATCTCTACTATCGGTTGGATCATCTTCTCAAATGTATACCAGTCAAAAATTTGGACCATCGGGTTTCATCTGCCGCCTGCCAAAGTTTGAGAAGCATCTTGAGATGATACCAGAAGATGAGACTCCAGAGATCCTGCAAGGCACTCTTGCTGGTGGTGTGAAGTCTACCTCTCCAAACAGCAAGAGGGTTTCACCTCCTCATCACAAGATTGGGTCAACTCGTGCTTGGAGGAGTGGAAGGAAGTTGATTCTAAGATCTATTCCATCATTCCCATCTCTCAATCCTTGCCAGGAGAGCAGTGACCGTTCCCCAGGAAAGACCCAGTGA 2406 0.4235 MDTPEKYQIATPISKYEDSPVFNYINSLSPIKPVKSIPTDQTFSSLSFASPSSVFTSPHINPQRESRFLRRQQFTDPSKPEFSRRDNDENTSEGVLDAVHQLDYLDPGSSDTGITIDPSNKDPKSDAGLPQSLKYDCTSPEDNRIPHNDIETETMPEVAIRPASHVHFVQGVSKERRQSFEIETELRGICQIGESKEAAGCDWGKLISDDTDQLIFDSSISKEHSEVQDHKTVDPGTYSFIATVLQLPHDEIDDLQKSQSMGSVDSYEQCETEETVTKSRDVGEIKETDQTPAVPSSTLLDKLVVSDSRAEVDDKKGKKCMQSSCKQLSIRRRCLLYEMTGAHKKKLIYNSDSGSSASSQSDGKVSSDEKQFMPFKPGNIHPSSMLAGIGLHLNALATTAEDGNKVVKHEPLASERKPISMSRSIPSLNSMSLGQTPLNKSLTPDLLERDLVRFDSEVQATEDASQTSEFGVSEEFNHGSPKRKRRRSEQAAENEACKRCNCKKSKCLKLYCECFAAGLYCVEPCSCQDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSSDYVPEFGDESNKTPASARHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNTFGRKDGTEEAELDEEETEETCDKNSLDTSSQYDVVLRGEEEHSDLVPPVTPSSEISRPLVQLPFTLGGGKPPQSSLLSVGSSSQMYTSQKFGPSGFICRLPKFEKHLEMIPEDETPEILQGTLAGGVKSTSPNSKRVSPPHHKIGSTRAWRSGRKLILRSIPSFPSLNPCQESSDRSPGKTQ* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0547 801 MobiDBLite consensus disorder prediction 349 374 - -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 260 292 - -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 742 766 - -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 48 63 - -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 48 142 - -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 420 438 - -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 64 93 - -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 781 801 - -
Vvi14g0547 801 SMART CXC_2 581 622 IPR033467 -
Vvi14g0547 801 SMART CXC_2 495 536 IPR033467 -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 783 801 - -
Vvi14g0547 801 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 793 IPR044522 GO:0003700
Vvi14g0547 801 MobiDBLite consensus disorder prediction 271 287 - -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 462 488 - -
Vvi14g0547 801 ProSiteProfiles CRC domain profile. 496 621 IPR005172 -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 408 438 - -
Vvi14g0547 801 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 584 619 IPR005172 -
Vvi14g0547 801 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 498 533 IPR005172 -
Vvi14g0547 801 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0547 Vvi-Chr14 6670990 6676940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0547 330 790 CPP Transcription Factor Family AT3G22780 47.771 1.43e-118 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vvi14g0547 TCR 5.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0547 - - vvi:100265943 1572.37