Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0537 ATGGGCACCAAGGCAAAGAAAGCCATGATAAAGAAATCGAAAAAGGGATCTTCTAAATTATCAGTTCCTGGGCATAAAAAAGCGGCTGCAGATTTCTTGCCATTAGAAGGTGGTCCTGGGCATGAACTTCCTGAGCAGGAACCACCAAAAAATACTGGTACGGTACTGTATATTGGTCGGATACCACATGGATTCTATGAGAATGAAATGGAAGGTTTCTTCAAGCAATTTGGTGCTGTCAAAAGATTAAGAATTGCGAGGAATAAGAAGACAGGAAAATCAAAGCATTTTGGCTTCATTGAATTTGAATCTCCTGAGGTGGCAAAAATTGTAGCTGAATGTATGCATAATCACCTGTTGTTCGAACACATCTTGCAAGTTCATGTTGTTCCTCCTGAGCATGTTCATCCAAAATTGTGGGTATTAGTCGACCCGCTTCAAAGAAGATTAGATTTGATGAAGAATAGGCGACAGGCTTTGAGGACTGTAGAAGAAGTATGTACGCTGTTTTGA 513 0.4035 MGTKAKKAMIKKSKKGSSKLSVPGHKKAAADFLPLEGGPGHELPEQEPPKNTGTVLYIGRIPHGFYENEMEGFFKQFGAVKRLRIARNKKTGKSKHFGFIEFESPEVAKIVAECMHNHLLFEHILQVHVVPPEHVHPKLWVLVDPLQRRLDLMKNRRQALRTVEEVCTLF* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0537 170 SMART rrm1_1 55 128 IPR000504 GO:0003723
Vvi14g0537 170 MobiDBLite consensus disorder prediction 1 21 - -
Vvi14g0537 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 121 IPR000504 GO:0003723
Vvi14g0537 170 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 143 - -
Vvi14g0537 170 CDD RRM_NIFK_like 55 128 - -
Vvi14g0537 170 SUPERFAMILY RNA-binding domain, RBD 33 137 IPR035979 GO:0003676
Vvi14g0537 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Vvi14g0537 170 Gene3D - 3 136 IPR012677 -
Vvi14g0537 170 MobiDBLite consensus disorder prediction 1 51 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0537 54 127 Eukaryotic Initiation Factors Gene Family AT1G71770 29.730 7.58e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0537 K14838 - vvi:100255455 272.322