LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g0496	ATGGGGTGTGTACTTGGTCGTGAAGTGTTGTCGAACGTGGTGGTTTCGGAGGCTAATGGGGCGGAGAAGAGTATCAAGGAGAAGAGGAGTAATTCGAGTGTCAATTCGAATAGGAAGTTGGATGATGTGACGAAGAAAAGTGATAGTAAGGTTGAGGTTGGTAACGGAGAGACCCAAAAGGAGGAGAAGACTGATGGTAGTCAACGGCCCCGAGGTGATAAGAAAAAATTGAGGTCAAATCCGAGGTTGAGTAATCTGCCCAATCATGTGCGTGGAGAGCAAGTTGCAGCTGGGTGGCCGTCTTGGTTATCGGATGTTGCAGGGCCAGCACTTAATGGCTGGATACCTCGGCGAGCAGACACTTTCCAGAAACTTGATAAGATTGGACAAGGAACATATAGCAATGTGTATAAAGCTAGAGATATGTTAACGGGCAAAATTGTTGCACTAAAGAAAGTTCGATTTGATAATTTGGAACCTGAGAGTGTGAAATTTATGGCTAGAGAGATTGTCATTTTGCGGCGCTTGGATCATCCCAATGTTGTAAAATTGGAGGGTTTGGTGACTTCAAGGCTGTCCTGCAGTTTGTATCTTGTATTTGAGTATATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCGGGTATCAAATTCACTGAACCTCAGGTCAAATGTTACATGAAACAACTACTATCTGGCCTAGAGCATTGTCACAACCGCGGTGTGCTTCACCGTGACATCAAAGGATCAAATCTCCTTCTTGATAATGGAGGAGTACTTAAGATTGCTGATTTTGGCTTGGCTGCTATATTTGATCCTAATTACAAGCACCCAATGACGAGTCGGGTGGTAACCTTATGGTATCGACCTCCAGAGCTTCTGCTTGGGGCTAATGACTATGGCGTCGGTGTGGACTTGTGGAGTGCAGGCTGCATTTTAGCTGAGTTATTGGCTGGGAAGCCCATCATGCCTGGTCGTACAGAGGTAGAGCAATTACATAAGATATACAAGCTATGTGGCTCACCTTCTGATGAATACTGGAAAAAATATAGATTGCCAAATGCAACCTTATTCAAGCCTCGAGAGCCTTACAAACGATGCATAGCAGAGACATTCAAAGACTTCCCACCATCTTCACTGCCACTTATTGAAACTCTTCTTGCAATTGATCCAGTGGAACGTCGGACAGCCACAGCTGCATTAAACTGTGAATTCTTCACAACGAAACCTTATGCTTGTGAACCATCTAGCCTTCCGCAATATCCTCCAAGCAAGGAGATGGATGCCAAGAGGCGAGATGATGAAGCTCGAAGGCAAAAAACCGCTAGCAAAGCCCACGGTGATGGTGCGAAGAAAATGCGTCCACGCGCTAGGGCAATGCCTGGACCAGAAGCCAATGCTGAGCTTCAATCTAATCTTGATCGAAGACGCCTAATCTCCCATGCAAATGCAAAGAGTAAGAGTGAAAAGTTTCCTCCACCTCACCAGGACGGAGCAGTTGGCTTCCCCTTGGGTGCTTCACAACACATTGATCCTGCTTTTGTCCCTGGTGATGTGCCATTCAGTTCTACATCATTTACATCTTCAAAAGATCATGCCCAGACCTGGTCCGGTCCAATAGGCGACCCTGCTGCCATTGGAGCTCTAAGGCGAAAGAAGAACACTTATGGTGATGCTCGAGAACCGAAAAAACCAGCAGCAGTTAACCCAAGGGACGGAAGTGCGAAGGTGAGGGTGGTTAAAGGATAG	1749	0.4637	MGCVLGREVLSNVVVSEANGAEKSIKEKRSNSSVNSNRKLDDVTKKSDSKVEVGNGETQKEEKTDGSQRPRGDKKKLRSNPRLSNLPNHVRGEQVAAGWPSWLSDVAGPALNGWIPRRADTFQKLDKIGQGTYSNVYKARDMLTGKIVALKKVRFDNLEPESVKFMAREIVILRRLDHPNVVKLEGLVTSRLSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLLDNGGVLKIADFGLAAIFDPNYKHPMTSRVVTLWYRPPELLLGANDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKYRLPNATLFKPREPYKRCIAETFKDFPPSSLPLIETLLAIDPVERRTATAALNCEFFTTKPYACEPSSLPQYPPSKEMDAKRRDDEARRQKTASKAHGDGAKKMRPRARAMPGPEANAELQSNLDRRRLISHANAKSKSEKFPPPHQDGAVGFPLGASQHIDPAFVPGDVPFSSTSFTSSKDHAQTWSGPIGDPAAIGALRRKKNTYGDAREPKKPAAVNPRDGSAKVRVVKG*	583

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g0496	582	MobiDBLite	consensus disorder prediction	416	474	-	-
	Vvi14g0496	582	Pfam	Protein kinase domain	122	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi14g0496	582	MobiDBLite	consensus disorder prediction	21	80	-	-
	Vvi14g0496	582	MobiDBLite	consensus disorder prediction	425	458	-	-
	Vvi14g0496	582	SMART	serkin_6	122	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi14g0496	582	CDD	STKc_CDK9_like	122	406	-	-
	Vvi14g0496	582	ProSitePatterns	Protein kinases ATP-binding region signature.	128	151	IPR017441	GO:0005524
	Vvi14g0496	582	FunFam	probable serine/threonine-protein kinase At1g54610	109	204	-	-
	Vvi14g0496	582	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	242	254	IPR008271	GO:0004672\|GO:0006468
	Vvi14g0496	582	MobiDBLite	consensus disorder prediction	17	90	-	-
	Vvi14g0496	582	PANTHER	CELL DIVISION PROTEIN KINASE	120	410	-	-
	Vvi14g0496	582	Gene3D	Phosphorylase Kinase; domain 1	110	204	-	-
	Vvi14g0496	582	FunFam	probable serine/threonine-protein kinase At1g54610	205	446	-	-
	Vvi14g0496	582	SUPERFAMILY	Protein kinase-like (PK-like)	116	411	IPR011009	-
	Vvi14g0496	582	MobiDBLite	consensus disorder prediction	553	567	-	-
	Vvi14g0496	582	MobiDBLite	consensus disorder prediction	525	582	-	-
	Vvi14g0496	582	Gene3D	Transferase(Phosphotransferase) domain 1	205	446	-	-
	Vvi14g0496	582	ProSiteProfiles	Protein kinase domain profile.	122	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g0496	Vvi-Chr14	5780214	5786368	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g0496	114	444	Core Cell Cycle Gene Families	AT5G10270	50.432	6.19e-117	355

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vvi14g0496		Pkinase	2.1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g0496	K08819		-	vvi:100253772	1176.39