Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0440 ATGTCGTGTTACCGAGGGCCTCGTTTCAAAAAAATACGCCGTTTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCTAGAGCCGGAAGTGATCTTCGAAACCAATCACGTTCCGGGAAAAGATCTCAATATCGTATTCGTTTAGAAGAAAAACAGAAATTGCGTTTTCATTATGGTCTTACAGAACGCCAATTACTTAACTATGTTCATATCGCCAGAAAAGCCAAATGGGCAATAGGTCGGGTTTTACTCCAATTACTTGAAATGCATTTGGATAACATCCTTTTTCGATTGGGTATGGCTTCGACTATTCTTGGAGCCCGCCAATTAGTTAATCATAGACATATTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATTGCTGCAAACCCTGA 399 0.401 MSCYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYGLTERQLLNYVHIARKAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPSYCCKP* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0440 132 ProSiteProfiles S4 RNA-binding domain profile. 89 128 - -
Vvi14g0440 132 SMART Ribosomal_S4_2 3 88 IPR001912 GO:0019843
Vvi14g0440 132 Gene3D - 96 132 IPR036986 GO:0003723
Vvi14g0440 132 MobiDBLite consensus disorder prediction 20 44 - -
Vvi14g0440 132 SUPERFAMILY Alpha-L RNA-binding motif 4 132 - -
Vvi14g0440 132 PANTHER 30S 40S RIBOSOMAL PROTEIN 28 132 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vvi14g0440 132 Pfam Ribosomal protein S4/S9 N-terminal domain 4 88 IPR001912 GO:0019843
Vvi14g0440 132 Pfam S4 domain 91 128 IPR002942 GO:0003723
Vvi14g0440 132 FunFam 30S ribosomal protein S4, chloroplastic 3 98 - -
Vvi14g0440 132 CDD S4 91 132 - -
Vvi14g0440 132 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0440 Vvi-Chr14 4826073 4826471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0440 74 131 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 36.207 1.72e-06 43.5