Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g0411 ATGGCGAGATACAGAAGCCGTAGCAGAAGCTACAGCCCTCGCCGCAGCAGAACTCCTCCTCGACGGCGTCGTTTCGACGACCGCTCCAGACCCAGTCGCTCCTATCGCGACCGCCGCTCCCCTGCTCCCTCTGGCCTCCTTGTTCGCAACATCGCTCTCGATGCCAGGCCTGAGGATCTTAGAGTCCCATTTGAGCGTTTTGGTCCAGTGAAGGATGTGTATCTTCCCAAGAATTACTATACTGGGGAGCCCCGTGGCTTTGGATTTGTGAAGTTTCGTAATGCGGAGGATGCTGCCGAAGCTAAGCATCATTTGAATCACTCAGTTATTGGTGGACGTGAAATAGCTATTGTTTTTGCTGAAGAGAATAGAAAAACTCCTCAGGAGATGCGTACGAATTCACGTGTAAGTGGCAGGCATGGAGGAAGCTATAGAAGGCGAAGTCCACCTAGGTCCCCAAGACGTAGATATCGCTCCTATTCACGGTCACCTTCACCAGTCAGGCATGATTCAAGAGACAGGGATCGTGGAGGAAGAGATTATTACTCACCATCACGCTCTAGGTCTGTTTCACGATCTGTATCTCCCCGTGATGATAAGCACTACAGGTCTAATCATAACTCAAAGAGTCCAAGGCAGAATGATCAGAGTCCCCGCAGCAACAGGGACCGTGGATCAGATAAGAGGTCATTCAGTCCAATGAAGAATGGTCAAAGTCCTAGGTCACCAAGTCCAAGAGAGAATGACCGCCGTAAGCATGGTAAGAAGAACCAAGGTTCTGACCGGCGATCACCAAGTCCAAGGAGGTATGAGCGGAGTTTATCAAGATCTCCTTCTCGTTCCCGTTCTTACAGTCCTCGCTGA 864 0.5069 MARYRSRSRSYSPRRSRTPPRRRRFDDRSRPSRSYRDRRSPAPSGLLVRNIALDARPEDLRVPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRNAEDAAEAKHHLNHSVIGGREIAIVFAEENRKTPQEMRTNSRVSGRHGGSYRRRSPPRSPRRRYRSYSRSPSPVRHDSRDRDRGGRDYYSPSRSRSVSRSVSPRDDKHYRSNHNSKSPRQNDQSPRSNRDRGSDKRSFSPMKNGQSPRSPSPRENDRRKHGKKNQGSDRRSPSPRRYERSLSRSPSRSRSYSPR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g0411 287 Gene3D - 2 136 IPR012677 -
Vvi14g0411 287 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 40 273 - -
Vvi14g0411 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 115 IPR000504 GO:0003723
Vvi14g0411 287 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Vvi14g0411 287 MobiDBLite consensus disorder prediction 121 287 - -
Vvi14g0411 287 MobiDBLite consensus disorder prediction 1 42 - -
Vvi14g0411 287 MobiDBLite consensus disorder prediction 244 276 - -
Vvi14g0411 287 SMART rrm1_1 45 118 IPR000504 GO:0003723
Vvi14g0411 287 SUPERFAMILY RNA-binding domain, RBD 39 148 IPR035979 GO:0003676
Vvi14g0411 287 MobiDBLite consensus disorder prediction 1 19 - -
Vvi14g0411 287 MobiDBLite consensus disorder prediction 20 37 - -
Vvi14g0411 287 MobiDBLite consensus disorder prediction 192 208 - -
Vvi14g0411 287 MobiDBLite consensus disorder prediction 216 230 - -
Vvi14g0411 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Vvi14g0411 287 MobiDBLite consensus disorder prediction 140 162 - -
Vvi14g0411 287 MobiDBLite consensus disorder prediction 163 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g0411 Vvi-Chr14 4336069 4353615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g0411 14 106 Eukaryotic Initiation Factors Gene Family AT3G11400 37.634 1.61e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g0411 K12900 - vvi:100262434 363.614